The order in which to run the analyses is:
- Methylation Regression Analysis
- RNA-Seq Analysis
- eQTM Analysis
In each of these folders contains a jupyter notebook with the R code to replicate our results. You can extract the code by copying to a new Rscript or you can use an irkernel + jupyter to execute the notebook.
If you have trouble running the scripts, please do not hesitate to contact me.
Peter Christopher Allen