A tool to extract all CPIC guideline gene variants from a genetic dataset (represented as a VCF file), interpret the variant alleles, and generate a report.
For more detail, read the PharmGKB blog post about PharmCAT or the article on GenomeWeb
❗ ❗ ❗ FOR TESTING ONLY ❗ ❗ ❗
This application is under development and has not been officially released. Watch this repo or check the releases page for the official release
All technical requirements and documentation are available in the wiki.
PharmCAT is managed at Stanford University & University of Pennsylvania (NHGRI U24HG010862)
For technical questions or bug reports, file an issue.
For general questions about the PharmCAT project, contact email@example.com.
⚠️ PhamCAT assumes no responsibility for any injury to person or damage to persons or property arising out of, or related to any use of PharmCAT, or for any errors or omissions. The user recognizes they are using PharmCAT at their own risk.