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The Pharmacogenomic Clinical Annotation Tool
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README.md

PharmCAT

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A tool to extract all CPIC guideline gene variants from a genetic dataset (represented as a VCF file), interpret the variant alleles, and generate a report.

For more detail, read the PharmGKB blog post about PharmCAT or the article on GenomeWeb

Status

❗️ ❗️ ❗️ FOR TESTING ONLY ❗️ ❗️ ❗️

This application is under development and has not been officially released. Watch this repo or check the releases page for the official release

All technical requirements and documentation are available in the wiki.

Contact

For questions about the PharmCAT project, contact pharmcat@pharmgkb.org

Liability

⚠️ PhamCAT assumes no responsibility for any injury to person or damage to persons or property arising out of, or related to any use of PharmCAT, or for any errors or omissions. The user recognizes they are using PharmCAT at their own risk.

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