Applied Epi - fake COVID linelist

A report dashboard constructed with mock linelist data from Applied Epi.

Project description

With a csv formatted COVID-19 linelist, this analysis checks the data for errors and constructs the following outputs:

• Rolling graph of cumulative cases and hospitalisations from the last six months

• Summary table of new cases and hospitalisations from the last 7 days

• A plotly map of new cases from the last 7 days with locations

• Demographic tables of cases from the last 6 months broken down by age, gender, race and ethnicity

• A graph of the relative percentages of the most common symptoms in COVID cases from the last 6 months.

Requirements

This dashboard has been constructed entirely in R and Rmarkdown. The following packages, available on CRAN are required:

• tidyverse
• readxl
• here
• runner
• lubridate
• ggmap
• osmdata
• plotly
• showtext
• gt
• gtsummary
• apyramid
• reactablefmtr