Added speciesTable to fitted model #501
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [ChangingToR6] | |
| pull_request: | |
| branches: [ChangingToR6] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-12, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| RSPM: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| #- uses: r-lib/actions/setup-r@v1 | |
| # with: | |
| # r-version: ${{ matrix.config.r }} | |
| # http-user-agent: ${{ matrix.config.http-user-agent }} | |
| # use-public-rspm: true | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| extra-repositories: "https://inla.r-inla-download.org/R/testing" | |
| - name: Install system dependencies on Linux (GL) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update -y && sudo apt-get install -y libglu1-mesa-dev | |
| - name: Install system dependencies on MacOS (X11, gdal) | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install --cask xquartz | |
| brew install pkg-config | |
| brew install proj@9 | |
| brew install gdal | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: '"all"' | |
| extra-packages: | | |
| rcmdcheck | |
| - uses: r-lib/actions/check-r-package@v2 | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| with: | |
| args: 'c("--no-manual", "--as-cran")' | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |