PhyLoss - phylostratigraphy of gene families gain and loss

The repository contains the sample data and the analysis scripts accompanying the manuscript Domazet-Lošo, M., Široki, T., Šimičević, K. and Domazet-Lošo T. Macroevolutionary dynamics of gene family gain and loss along multicellular eukaryotic lineages. Nat Commun 15, 2663 (2024). https://doi.org/10.1038/s41467-024-47017-w

Requirements

To run the scripts you need to install Python 3.6 or later, and MMseqs2 available at:

• http://www.python.org/getit/
• https://github.com/soedinglab/MMseqs2

Instructions to run scripts

Available at Scripts/Readme.txt

Team

• Mirjana Domazet-Lošo
• Tin Široki
• Korina Šimičević
• Tomislav Domazet-Lošo

Acknowledgments

This work was supported by the Croatian Science Foundation under the project IP-2016-06- 5924, the City of Zagreb, the Adris Foundation, the European Regional Development Fund (KK.01.1.1.01.0009 DATACROSS). We used the computational resources of the Isabella cluster at University of Zagreb University Computing Center (Srce) and the Institute Ruđer Bošković, Zagreb.