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More purple version of theTesting Tommy's JSON file solution from the submission system.
 article pages. 
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KarinLundengard committed May 19, 2020
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17 changes: 0 additions & 17 deletions content/Articles/PanCrampin.md

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26 changes: 26 additions & 0 deletions content/Articles/Test1.md
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Slug: 10.5072/FK2.stagefigshare.6854095
DOI: 10.5072/FK2.stagefigshare.6854095
Title: Bond Graph Model of Cerebral Circulation: Toward Clinically Feasible Systemic Blood Flow Simulations.
Date: 2020-05-06
SubmissionDate: 2020-04-15
PublishDate: 2020-05-06
LastPublishDate: 2020-05-06
Kind: original
PubAuthors: Su, S.
Blanco, P. J.
Müller, L. O.
Hunter, P. J.
Safaei, S.
PubAuthorsORCID: 0000-0001-6492-2619
0000-0003-3527-619X
0000-0003-1933-8995
0000-0001-9665-4145
0000-0001-5734-243X
MathsURL:
PMRURL: https://models.physiomeproject.org/workspace/4ac
RunModelURL:
PrimaryPaperName: Bond Graph Model of Cerebral Circulation: Toward Clinically Feasible Systemic Blood Flow Simulations. 2018, S. Safaei, P.J. Blanco, L.O. Müller, L.R. Hellevik, P.J. Hunter
PrimaryPaperURL: https://doi.org/10.3389/fphys.2018.00148
FulltextURL: https://physiome.figsh.com/articles/Bond_Graph_Model_of_Cerebral_Circulation_Toward_Clinically_Feasible_Systemic_Blood_Flow_Simulations_/6854095
ArchiveURL: https://physiome.figsh.com/ndownloader/files/828782095
Abstract: The primary paper proposed an anatomically detailed model of the human cerebral circulation that runs faster than real-time on a desktop computer and is designed for use in clinical settings when the speed of response is important. Based on a one-dimensional formulation of the flow of an incompressible fluid in distensible vessels, a lumped parameter model was developed for 218 arterial segments. The proposed model improved simulation speed by approximately 200-fold while preserved accuracy. Bond graph formulation was used to ensure mass and energy conservation. The model predicted the pressure and flow signatures in the body.
38 changes: 24 additions & 14 deletions content/Articles/Nimah2.md → content/Articles/Test2.md
@@ -1,18 +1,28 @@
Slug:
DOI:
Slug: 10.5072/FK2.stagefigshare.6853437
DOI: 10.5072/FK2.stagefigshare.6853437
Title: Incorporation of sarcolemmal calcium transporters into the Shorten et al. (2007) model of skeletal muscle: equations, coding, and stability
Date: 2020-01-30
PubAuthors: Noble, D.
Noble, P.
Shorten, P. R.
Garny, A.
Tasaki, T.
Date: 2020-05-05
SubmissionDate: 2020-05-05
PublishDate: 2020-05-05
LastPublishDate: 2020-05-05
Kind: original
PubAuthors: Noble, P.
Noble, D.
Shorten, P. R.
Garny, A.
Tasaki, K.
Afshar, N.
MathsURL:
PubAuthorsORCID: ​
0000-0002-3013-3694
0000-0002-2590-6410
MathsURL:
PMRURL: https://models.physiomeproject.org/workspace/5c6
RunModelURL:
PrimaryPaperName: A mathematical model of fatigue in skeletal muscle force contraction 2007 P.R. Shorten, P. O’Callaghan, J.B. Davidson, T.K. Soboleva
PrimaryPaperURL: https://link.springer.com/article/10.1007/s10974-007-9125-6
FulltextURL: https://physiome.figsh.com/articles/Incorporation_of_sarcolemmal_calcium_transporters_into_the_Shorten_et_al_2007_model_of_skeletal_muscle_equations_coding_and_stability/6720102
ArchiveURL: https://physiome.figsh.com/articles/Incorporation_of_sarcolemmal_calcium_transporters_into_the_Shorten_et_al_2007_model_of_skeletal_muscle_equations_coding_and_stability/6720102
RunModelURL:
PrimaryPaperName: A mathematical model of fatigue in skeletal muscle force contraction. 2007, P.R. Shorten, P. O’Callaghan, J.B. Davidson, T.K. Soboleva
PrimaryPaperURL: https://doi.org/10.1007/s10974-007-9125-6
FulltextURL: None
ArchiveURL: None
Abstract: We describe a major development of the Shorten et al. (2007) model of skeletal muscle electrophysiology, biochemistry and mechanics. The model was developed by incorporating equations for sarcolemmal transport of calcium ions, including L-type calcium channel, sodium-calcium exchange, calcium pump and background calcium channel. The extended model also includes an addition to the equations for extracellular potassium ion movements to enable the exchange of potassium ions between bulk (plasma) concentration and the interstitial and tubular compartments to be modelled. In further research in an accompanying paper (Tasaki et al, 2019), we succeeded in reproducing muscle cramp, as well as its prevention and reversal, by investigating muscle contraction and cramp using this extended model in comparison with the original model.
64 changes: 41 additions & 23 deletions themes/pj/templates/article.html
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{% import 'shared/pub.html' as pub %}
{% block title %} {{page.title}} {% endblock %}
{% block body %}


{{article.kind}}

<h2>{{article.title}}</h2>
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<p>
Published: {{article.publishdate}}, Submitted: {{article.submissiondate}}, Last edited: {{article.lastpublishdate}}
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To cite this article, use the DOI: <a href="https://doi.org/{{article.doi}}">{{article.doi}}</a>
To cite this article, use the DOI: <a style="color:#580078" href="https://doi.org/{{article.doi}}">{{article.doi}}</a>
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{% endif %}
<p>
{% if article.fulltexturl %}
<a class="button" href="{{article.fulltexturl}}" style="width: 140px; height: 40px; background-color: #e7e7e7; border: 2px solid #e7e7e7; padding: 0px; margin: 0px; border: 0px" rel="noopener" target="_blank" ><img src="{{SITEURL}}/theme/images/Fulltext_button.svg"> </a>
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{% if article.pmrurl %}
<a class="button" href="{{article.pmrurl}}" style="width: 140px; height: 40px; background-color: #e7e7e7; border: 2px solid #e7e7e7; padding: 0px; margin: 0px; border: 0px" rel="noopener" target="_blank" ><img src="{{SITEURL}}/theme/images/PMR_button.svg" style="width: 100%; height: 100%; padding: 0px; margin: 0px; border: 0px"> </a>
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{% if article.runmodelurl %}
<a class="button" href="{{article.runmodelurl}}" style="width: 140px; height: 40px; background-color: #e7e7e7; border: 2px solid #e7e7e7; padding: 0px; margin: 0px; border: 0px" ><img src="{{SITEURL}}/theme/images/Run_button.svg"> </a>
{% endif %}
</p>

{% if article.archiveurl %}
<p><em>Physiome</em> article <span data-tooltip aria-haspopup="true" class="has-tip top" data-disable-hover="false" tabindex="1" title="This is the figshare archive containing all the resources required to support reproducibility.">archive</span> available at
<a href="{{article.archiveurl}}" target="_blank">{{article.title}}</a>
</p>
{% else %}
<p><em>Article archive not yet available.</em></p>
{% endif %}
<div style = "text-align: left;">

<style>
.button {
border: 1px solid #580078;
background-color: #580078;
color: white;
padding: 15px 25px;
text-align: center;
font-size: 16px;
vertical-align: middle;
cursor: pointer;
margin-bottom: 0;
}

</style>

{% if article.fulltexturl %}
<a <button href="{{article.fulltexturl}}" class="button">Fulltext</button> </a>
{% endif %}

{% if article.archiveurl %}
<a <button href="{{article.archiveurl}}" class="button">figshare archive</button> </a>
{% endif %}

{% if article.pmrurl %}
<a <button href="{{article.pmrurl}}" class="button">PMR workspace</button> </a>
{% endif %}

</div>

{% if article.primarypaperurl %}
<p>This <em>Physiome</em> paper describes models from the primary paper: <a rel="noopener" target="_blank" href="{{article.primarypaperurl}}">{{article.primarypapername}}</a></p>
{% endif %}

{% if article.abstract %}
<h3>Abstract</h3>
<p>{{article.abstract}}</p>
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{% if article.primarypaper %}
{% endif %}
{% if article.documents %}
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