Skip to content
@PistilliLab

The Pistilli Lab

Software developed by the Pistilli lab.

Popular repositories

  1. ColonyTrace ColonyTrace Public

    A comprehensive software suite for tracking the full lifespan of research mice.

    Python

  2. CLAMSwrangler CLAMSwrangler Public

    Python program for cleaning, trimming, binning, and reformatting of data generated by the Columbus Instruments CLAMS for downstream statistical analysis.

    Python

  3. RNAseq-pipeline RNAseq-pipeline Public

    Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.

    Shell

  4. PHYSwrangler PHYSwrangler Public

    Code to process data generated by Aurora Scientific muscle physiology system.

    Python

  5. miRNAseq-Pipeline miRNAseq-Pipeline Public

    Scripts for processing miRNA sequencing data using the miRDeep2 package

    Shell

  6. SequenceExtract SequenceExtract Public

    Extracts genomic sequences surrounding gene loci supplied in a text file containing Entrez IDs.

    Python

Repositories

Showing 8 of 8 repositories
  • ColonyTrace Public

    A comprehensive software suite for tracking the full lifespan of research mice.

    Python 0 GPL-3.0 0 0 0 Updated Apr 17, 2024
  • CLAMSwrangler Public

    Python program for cleaning, trimming, binning, and reformatting of data generated by the Columbus Instruments CLAMS for downstream statistical analysis.

    Python 0 GPL-3.0 0 1 0 Updated Apr 4, 2024
  • CLAMSwrangler-web Public

    Web version of CLAMS Wrangler. Built using Django and bootstrap.

    Python 0 GPL-3.0 0 0 0 Updated Mar 19, 2024
  • misc Public

    Miscellaneous scripts not directly associated with any other repos here.

    Python 0 GPL-3.0 0 0 0 Updated Feb 8, 2024
  • SequenceExtract Public

    Extracts genomic sequences surrounding gene loci supplied in a text file containing Entrez IDs.

    Python 0 GPL-3.0 0 0 0 Updated Dec 1, 2023
  • miRNAseq-Pipeline Public

    Scripts for processing miRNA sequencing data using the miRDeep2 package

    Shell 0 GPL-3.0 0 0 0 Updated Nov 1, 2023
  • RNAseq-pipeline Public

    Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.

    Shell 0 GPL-3.0 0 1 0 Updated Oct 31, 2023
  • PHYSwrangler Public

    Code to process data generated by Aurora Scientific muscle physiology system.

    Python 0 GPL-3.0 0 0 0 Updated Oct 2, 2023

Top languages

Loading…

Most used topics

Loading…