Merge pull request #80 from sameeul/ts_backend_PR

Add tensorstore backend
PolusAI · Apr 30, 2024 · 72c5784 · 72c5784
2 parents 528f93f + 178cab4
commit 72c5784
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Showing 9 changed files with 856 additions and 557 deletions.
diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -25,7 +25,9 @@
 author = "Nicholas J Schaub"
 
 # The full version, including alpha/beta/rc tags
-with open(str(Path(__file__).parent.parent.parent.joinpath("src/bfio/VERSION")), "r") as fr:
+with open(
+    str(Path(__file__).parent.parent.parent.joinpath("src/bfio/VERSION")), "r"
+) as fr:
     release = fr.readline()
 
 # -- General configuration ---------------------------------------------------
@@ -69,7 +71,7 @@
 
 autodoc_default_options = {
     "members": True,
-    "special-members": "__getitem__,__call__,__setitem__"
+    "special-members": "__getitem__,__call__,__setitem__",
     # 'exclude-members': '__weakref__'
 }
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -10,7 +10,8 @@ requires = [
   "zarr>=2.6.1",
   "scyjava",
   "jpype1",
-  "tifffile>=2022.8.12"
+  "tifffile>=2022.8.12",
+  "bfiocpp"
 ]
 build-backend = "setuptools.build_meta"
 
@@ -25,7 +26,8 @@ dependencies = [
     "zarr>=2.6.1",
     "scyjava",
     "jpype1",
-    "tifffile>=2022.8.12"
+    "tifffile>=2022.8.12",
+    "bfiocpp"
 ]
 
 description = "Simple reading and writing classes for tiled tiffs using Bio-Formats."

diff --git a/src/bfio/__init__.py b/src/bfio/__init__.py
@@ -26,4 +26,5 @@
 logger.info("VERSION = {}".format(__version__))
 
 
-from .bfio import BioReader, BioWriter, start  # NOQA: F401, E402
+from .bfio import BioReader, BioWriter  # NOQA: F401, E402
+from .utils import start  # NOQA: F401, E402