This course was created from this GitHub template.
You can see the rendered course material here: practicalgenomics.github.io/cogaps-on-sciserver/
If you would like to contribute to this course material, take a look at the getting started GitHub wiki pages.
This course introduces a quick overview of how CoGAPS can provide new insights into single cell datasets. Through these exercises you will analyze a real dataset using the SciServer compute platform. No software or prior coding experience is required.
This course covers:
- How to join the compute platform, SciServer
- How to access and launch cellxgene
- How to load packages, data, configure/run CoGAPS, visualize patterns, find pattern markers, and document software in RStudio
If you are encountering any problems with this course, please file a GitHub issue or contact us at juliabowden6781@gmail.com.
All materials in this course are licensed under a Creative Commons Attribution 4.0 International License unless noted otherwise.
