Current modules in development

To install one of these modules on your local machine, use the GitHub account and repository name together

# Choose module and choose what folder to install it in. You will have to remember this folder.
# Choice 1 -- Normal Install
# This is easier for people who do not use git yet
# Get the function "getModule"
source("https://raw.githubusercontent.com/PredictiveEcology/SpaDES-modules/master/R/SpaDES_Helpers.R")
getModule('PredictiveEcology/Biomass_core', modulePath = ".") 

# Choice 2 -- Git Install
# This has the advantage that your source code will be linked to the main source code
# Use git command line or your favorite Git client and fork/clone it with:
git clone git@github.com:PredictiveEcology/Biomass_core

NOTE: some of these are not yet publicly available. Please write to the contact person to gain access.

The getModule function above will work if you have a GitHub Personal Access Token that gives your user access to the private repository.

Species at risk / conservation

Birds

• boreal songbirds (Tati Micheletti - private)
• waterfowl (Tati Micheletti - private -- Will be available in a couple of weeks)

Caribou

Environment and Climate Change Canada

Glenn Sutherland, Eliot McIntire

• ECCC_CaribouPM (private)

• ECCC_ScenarioBuilder (private)

• ECCC_CaribouPopnProjection (private)

• ECCC_CaribouPopnPredictors (private)

• CaribouRSF (private)

• CaribouTEK (private)

Multispecies management

• hotspot (conservation priorities) (Tati Micheletti - private)
• species diversity (Tati Micheletti - private)
• species trends (Tati Micheletti - private)

Vegetation Dynamics

LandR Biomass (Biomass Succession Vegetation Model)

A derivative of LANDIS-II Biomass Succession v2.

Eliot McIntire, Yong Luo, Ceres Barros, Alex Chubaty, Ian Eddy, Tati Micheletti

• Biomass_borealDataPrep
• Biomass_core
• Biomass_regeneration
• Biomass_speciesData
• Biomass_speciesParameters
• Biomass_validationKNN (Ceres Barros)

forestSuccessionFireSense

• forestSuccessionFireSense

Harvesting

• Wood Supply Simulation System and spades_ws3 (Greg Paradis)

Fire

fireSense

Jean Marchal, Eliot McIntire, Steve Cumming, Ian Eddy, Tati Micheletti, Ceres Barros, Alex Chubaty

• Boreal_FireSenseDataPrep
• fireSense_dataPrepFit
• fireSense
• fireSense_EscapeFit
• fireSense_EscapePredict
• fireSense_SizeFit
• fireSense_SizePredict
• fireSense_SpreadFit
• fireSense_SpreadPredict
• fireSense_FrequencyFit
• fireSense_FrequencyPredict

Steve Cumming Fire Models (SCFM)

Steve Cumming, Eliot McIntire, Ian Eddy

• ageModule
• scfmDriver
• scfmEscape
• scfmIgnition
• scfmLandcoverInit
• scfmRegime
• scfmSpread

Other fire modules

• Biomass_regenerationPM
• Biomass_fireProperties (Ceres Barros)
• Biomass_fuels (Ceres Barros)
• Biomass_fuelsPFG (Ceres Barros)
• fireSeverity
• LandMine (Eliot McIntire, Dave Andison)

LandWeb

Alex Chubaty, Eliot McIntire

Main project repo: LandWeb

• LandWeb_preamble
• LandWeb_output

LandWeb also uses Biomass_speciesData, Biomass_core, Biomass_borealDataPrep, Biomass_regeneration, LandMine and timeSinceFire.

Insect disturbance

Mountain pine beetle (LandR_MPB)

Alex Chubaty, Eliot McIntire, Barry Cooke

Mountain Pine Beetle Red Top Model, which evaluates short-run potential for MPB establishment, eruption, and spread.

• mpbClimateData
• mpbManagement
• mpbMassAttacksData
• mpbPine
• mpbRandomLandscapes
• mpbRedTopSpread

Spruce Budworm ("TriSect")

Louis-Etienne Robert, Barry Cooke

• Disperse
• Impact
• InsectInit
• InsectOutput
• RecruitAndDefoliate
• ReproMods
• SpringInsect
• SpringPredator

Carbon

Celine Boisvenue, Scott Morken, Ian Eddy, Alex Chubaty

• CBM_core (private)
• CBM_dataPrep_SK (private)
• CBM_dataPrep_RIA (private)
• CBM_defaults (private)
• CBM_vol2biomass (private)

Anthropogenic disturbances

• development (private)

Invasive species

forest invasive alien species (Valentin Lafond)

• invasion
• mitigation
• valuation

Unclassified

• canDEM (Alex Chubaty - private)
• canWind (Alex Chubaty - private)
• timeSinceFire ## could be generalized as 'time since disturbance'