Non-file package-anchored link(s) in documentation object

[achubaty]

New check in R-devel is revealing some problems with help cross-links.

See discussion here: https://stat.ethz.ch/pipermail/r-package-devel/2020q2/005562.html

* checking Rd cross-references ... WARNING
Non-file package-anchored link(s) in documentation object 'Plot.Rd':
  '[quickPlot]{gpar}'
Non-file package-anchored link(s) in documentation object 'SpaDES.core-package.Rd':
  '[SpaDES.tools]{directionFromEachPoint}' '[SpaDES.tools]{move}'
  '[SpaDES.tools]{specificNumPerPatch}'
  '[SpaDES.tools]{rasterizeReduced}'
  '[quickPlot:setColors<-]{setColors}' '[SpaDES.tools]{gaussMap}'
  '[SpaDES.tools]{agentLocation}' '[SpaDES.tools]{numAgents}'
  '[SpaDES.tools]{probInit}' '[SpaDES.tools]{transitions}'
  '[reproducible]{Cache}' '[reproducible]{showCache}'
  '[reproducible]{clearCache}' '[reproducible]{keepCache}'
Non-file package-anchored link(s) in documentation object 'addChangedAttr.Rd':
  '[reproducible]{.addChangedAttr}'
Non-file package-anchored link(s) in documentation object 'addTagsToOutput.Rd':
  '[reproducible]{.addTagsToOutput}'
Non-file package-anchored link(s) in documentation object 'cacheMessage.Rd':
  '[reproducible]{.cacheMessage}'
Non-file package-anchored link(s) in documentation object 'checkCacheRepo.Rd':
  '[reproducible]{.checkCacheRepo}'
Non-file package-anchored link(s) in documentation object 'parseElems.Rd':
  '[quickPlot]{.parseElems}'
Non-file package-anchored link(s) in documentation object 'preDigestByClass.Rd':
  '[reproducible]{.preDigestByClass}'
Non-file package-anchored link(s) in documentation object 'prepareOutput.Rd':
  '[reproducible]{.prepareOutput}'
Non-file package-anchored link(s) in documentation object 'setPaths.Rd':
  '[raster]{tmpDir}'
Non-file package-anchored link(s) in documentation object 'spades.Rd':
  '[reproducible]{Cache}'
Non-file package-anchored link(s) in documentation object 'tagsByClass.Rd':
  '[reproducible]{.tagsByClass}'
See section 'Cross-references' in the 'Writing R Extensions' manual.

[achubaty]

The last one is annoying, because I think it's coming in via @inheritParams quickPlot::Plot or something, but I haven't been able to track it down.

* checking Rd cross-references ... WARNING
Non-file package-anchored link(s) in documentation object 'Plot.Rd':
  ‘[quickPlot]{gpar}’
See section 'Cross-references' in the 'Writing R Extensions' manual.

[achubaty]

possibly solved in PredictiveEcology/quickPlot@a070ae8

update: nope, not solved yet

[achubaty]

this 'feature' was enabled, then recently disabled again in R-devel. A fix is forthcoming. closing issue here.