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Pass stderr through calc_install_files when commands fail #709

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JasonGross
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I'm not sure how good an idea this is. It complicates the code a bit, but will probably make it easier to diagnose issues like #706 in the future

@andrew-appel
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I'm not sure about this. How about a version that does NOT run each command twice, but puts the standard error (or other info) in a log file, for later diagnosis if necessary?

@JasonGross
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That's a much better idea! I've stuck the info in .calc_install_files.depend.log and .calc_install_files.make.log, let me know if you prefer other names.

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