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7227 refactor transformer and diffusion model unet #7715

Merged
merged 144 commits into from
May 10, 2024
Merged

7227 refactor transformer and diffusion model unet #7715

merged 144 commits into from
May 10, 2024

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marksgraham
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Part of #7227 .

Description

A few sentences describing the changes proposed in this pull request.

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

KumoLiu and others added 30 commits December 4, 2023 03:50
@KumoLiu
wholeBody_ct_segmentation failed to be download (Project-MONAI#7280)
2fc0126 
Fixes model-zoo#537



### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

Signed-off-by: KumoLiu <yunl@nvidia.com>
@KumoLiu
update the Python version requirements for transformers (Project-MONA…
88f8dd2 
…I#7275)

Part of Project-MONAI#7250.

### Description
Fix the Python version for transformers smaller than 3.10.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: KumoLiu <yunl@nvidia.com>
@kvttt @KumoLiu
7263 add diffusion loss (Project-MONAI#7272)
d5585c3 
Fixes Project-MONAI#7263.

### Description

Add diffusion loss. I also made a [demo
notebook](https://github.com/kvttt/deep-atlas/blob/main/diffusion_loss_scale_test.ipynb)
to provide some explanations and analyses of diffusion loss.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [x] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [x] In-line docstrings updated.
- [x] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: kaibo <ktang@unc.edu>
Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@heyufan1995
Fix swinunetrv2 2D bug (Project-MONAI#7302)
8212458 
Fixes # .

### Description

A few sentences describing the changes proposed in this pull request.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

Signed-off-by: heyufan1995 <heyufan1995@gmail.com>
@KumoLiu
Fix RuntimeError in DataAnalyzer (Project-MONAI#7310)
b1c8b42 
Fixes Project-MONAI#7309

### Description

`DataAnalyzer` only catch error when data is on GPU, add catching error
when data is on CPU.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@KumoLiu
Support specified filenames in Saveimage (Project-MONAI#7318)
6126a6e 
Fixes Project-MONAI#7317 

### Description

Add support specified filename for users to save like nibabel.save.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@KumoLiu
Fix typo (Project-MONAI#7321)
4c546b3 
Fix typo.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@binliunls
fix optimizer pararmeter issue (Project-MONAI#7322)
01a0ee1 
Fixes # .

### Description

A few sentences describing the changes proposed in this pull request.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

Signed-off-by: binliu <binliu@nvidia.com>
@KumoLiu @atbenmurray
Fix lazy ignored in SpatialPadd (Project-MONAI#7316)
90d2acb 
Fixes Project-MONAI#7314 Project-MONAI#7315.


### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
Co-authored-by: Ben Murray <ben.murray@gmail.com>
@KumoLiu
Update openslide-python version (Project-MONAI#7344)
f5327ad
@KumoLiu
Upgrade the version of transformers (Project-MONAI#7343)
b3d7a48 
Fixes Project-MONAI#7338

### Description

transformers' version is pinned to v4.22 since
Project-MONAI#5157.
Updated the version refer to
huggingface/transformers#21678.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@dependabot
Bump github/codeql-action from 2 to 3 (Project-MONAI#7354)
02973f0 
Bumps [github/codeql-action](https://github.com/github/codeql-action)
from 2 to 3.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/github/codeql-action/releases">github/codeql-action's
releases</a>.</em></p>
<blockquote>
<h2>CodeQL Bundle v2.15.5</h2>
<p>Bundles CodeQL CLI v2.15.5</p>
<ul>
<li>(<a
href="https://github.com/github/codeql-cli-binaries/blob/HEAD/CHANGELOG.md">changelog</a>,
<a
href="https://github.com/github/codeql-cli-binaries/releases/tag/v2.15.5">release</a>)</li>
</ul>
<p>Includes the following CodeQL language packs from <a
href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5"><code>github/codeql@codeql-cli/v2.15.5</code></a>:</p>
<ul>
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<li><code>codeql/ruby-queries</code> (<a
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<a
href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/ruby/ql/src">source</a>)</li>
<li><code>codeql/ruby-all</code> (<a
href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/ruby/ql/lib/CHANGELOG.md">changelog</a>,
<a
href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/ruby/ql/lib">source</a>)</li>
<li><code>codeql/swift-queries</code> (<a
href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/swift/ql/src/CHANGELOG.md">changelog</a>,
<a
href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/swift/ql/src">source</a>)</li>
<li><code>codeql/swift-all</code> (<a
href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/swift/ql/lib/CHANGELOG.md">changelog</a>,
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<h2>CodeQL Bundle v2.15.4</h2>
<p>Bundles CodeQL CLI v2.15.4</p>
<ul>
<li>(<a
href="https://github.com/github/codeql-cli-binaries/blob/HEAD/CHANGELOG.md">changelog</a>,
<a
href="https://github.com/github/codeql-cli-binaries/releases/tag/v2.15.4">release</a>)</li>
</ul>
<p>Includes the following CodeQL language packs from <a
href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4"><code>github/codeql@codeql-cli/v2.15.4</code></a>:</p>
<ul>
<li><code>codeql/cpp-queries</code> (<a
href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/cpp/ql/src/CHANGELOG.md">changelog</a>,
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href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/cpp/ql/src">source</a>)</li>
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href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/cpp/ql/lib/CHANGELOG.md">changelog</a>,
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<li><code>codeql/go-queries</code> (<a
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<h2>CodeQL Bundle</h2>
<p>Bundles CodeQL CLI v2.15.3</p>
<ul>
<li>(<a
href="https://github.com/github/codeql-cli-binaries/blob/HEAD/CHANGELOG.md">changelog</a>,
<a
href="https://github.com/github/codeql-cli-binaries/releases/tag/v2.15.3">release</a>)</li>
</ul>
<p>Includes the following CodeQL language packs from <a
href="https://github.com/github/codeql/tree/codeql-cli/v2.15.3"><code>github/codeql@codeql-cli/v2.15.3</code></a>:</p>
<ul>
<li><code>codeql/cpp-queries</code> (<a
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</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/github/codeql-action/blob/main/CHANGELOG.md">github/codeql-action's
changelog</a>.</em></p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/github/codeql-action/commit/e0c2b0a8a0cf7360f5f17b1ee83b98565e81cbaf"><code>e0c2b0a</code></a>
change version numbers inside processing function as well</li>
<li><a
href="https://github.com/github/codeql-action/commit/8e4a6c7a903526fda317aa47e226cbd5a4f1d358"><code>8e4a6c7</code></a>
improve handling of changelog processing for backports</li>
<li><a
href="https://github.com/github/codeql-action/commit/511f073971a2ce589ceea100a90831c5ca4310bb"><code>511f073</code></a>
Merge pull request <a
href="https://redirect.github.com/github/codeql-action/issues/2033">#2033</a>
from github/dependabot/npm_and_yarn/npm-0a98872b3d</li>
<li><a
href="https://github.com/github/codeql-action/commit/ebf5a837135e243d2654e281549af1ee7dc107aa"><code>ebf5a83</code></a>
Merge pull request <a
href="https://redirect.github.com/github/codeql-action/issues/2035">#2035</a>
from github/mergeback/v3.22.11-to-main-b374143c</li>
<li><a
href="https://github.com/github/codeql-action/commit/7813bda958fdd91160a45ff6cdb3a723b381c8c6"><code>7813bda</code></a>
Update checked-in dependencies</li>
<li><a
href="https://github.com/github/codeql-action/commit/2b2fb6b1dc9a83da2dd429ce0c83af9380973083"><code>2b2fb6b</code></a>
Update changelog and version after v3.22.11</li>
<li><a
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Merge pull request <a
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from github/update-v3.22.11-64e61baea</li>
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Merge branch 'main' into dependabot/npm_and_yarn/npm-0a98872b3d</li>
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Update changelog for v3.22.11</li>
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Bump actions/upload-artifact from 3 to 4 (Project-MONAI#7350)
38ac573 
Bumps
[actions/upload-artifact](https://github.com/actions/upload-artifact)
from 3 to 4.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/actions/upload-artifact/releases">actions/upload-artifact's
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<blockquote>
<h2>v4.0.0</h2>
<h2>What's Changed</h2>
<p>The release of upload-artifact@v4 and download-artifact@v4 are major
changes to the backend architecture of Artifacts. They have numerous
performance and behavioral improvements.</p>
<p>For more information, see the <a
href="https://github.com/actions/toolkit/tree/main/packages/artifact"><code>@​actions/artifact</code></a>
documentation.</p>
<h2>New Contributors</h2>
<ul>
<li><a href="https://github.com/vmjoseph"><code>@​vmjoseph</code></a>
made their first contribution in <a
href="https://redirect.github.com/actions/upload-artifact/pull/464">actions/upload-artifact#464</a></li>
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<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/upload-artifact/compare/v3...v4.0.0">https://github.com/actions/upload-artifact/compare/v3...v4.0.0</a></p>
<h2>v3.1.3</h2>
<h2>What's Changed</h2>
<ul>
<li>chore(github): remove trailing whitespaces by <a
href="https://github.com/ljmf00"><code>@​ljmf00</code></a> in <a
href="https://redirect.github.com/actions/upload-artifact/pull/313">actions/upload-artifact#313</a></li>
<li>Bump <code>@​actions/artifact</code> version to v1.1.2 by <a
href="https://github.com/bethanyj28"><code>@​bethanyj28</code></a> in <a
href="https://redirect.github.com/actions/upload-artifact/pull/436">actions/upload-artifact#436</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/upload-artifact/compare/v3...v3.1.3">https://github.com/actions/upload-artifact/compare/v3...v3.1.3</a></p>
<h2>v3.1.2</h2>
<ul>
<li>Update all <code>@actions/*</code> NPM packages to their latest
versions- <a
href="https://redirect.github.com/actions/upload-artifact/issues/374">#374</a></li>
<li>Update all dev dependencies to their most recent versions - <a
href="https://redirect.github.com/actions/upload-artifact/issues/375">#375</a></li>
</ul>
<h2>v3.1.1</h2>
<ul>
<li>Update actions/core package to latest version to remove
<code>set-output</code> deprecation warning <a
href="https://redirect.github.com/actions/upload-artifact/issues/351">#351</a></li>
</ul>
<h2>v3.1.0</h2>
<h2>What's Changed</h2>
<ul>
<li>Bump <code>@​actions/artifact</code> to v1.1.0 (<a
href="https://redirect.github.com/actions/upload-artifact/pull/327">actions/upload-artifact#327</a>)
<ul>
<li>Adds checksum headers on artifact upload (<a
href="https://redirect.github.com/actions/toolkit/pull/1095">actions/toolkit#1095</a>)
(<a
href="https://redirect.github.com/actions/toolkit/pull/1063">actions/toolkit#1063</a>)</li>
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<li><a
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Merge pull request <a
href="https://redirect.github.com/actions/upload-artifact/issues/466">#466</a>
from actions/v4-beta</li>
<li><a
href="https://github.com/actions/upload-artifact/commit/13131bb095770b4070a7477c3cd2d96e1c16d9f4"><code>13131bb</code></a>
licensed cache</li>
<li><a
href="https://github.com/actions/upload-artifact/commit/4a6c273b9834f66a1d05c170dc3f80f9cdb9def1"><code>4a6c273</code></a>
Merge branch 'main' into v4-beta</li>
<li><a
href="https://github.com/actions/upload-artifact/commit/f391bb91a3d3118aeca171c365bb319ece276b37"><code>f391bb9</code></a>
Merge pull request <a
href="https://redirect.github.com/actions/upload-artifact/issues/465">#465</a>
from actions/robherley/v4-documentation</li>
<li><a
href="https://github.com/actions/upload-artifact/commit/9653d03c4b74c32144e02dae644fea70e079d4b3"><code>9653d03</code></a>
Apply suggestions from code review</li>
<li><a
href="https://github.com/actions/upload-artifact/commit/875b63076402f25ef9d52c294c86ba4f97810575"><code>875b630</code></a>
add limitations section</li>
<li><a
href="https://github.com/actions/upload-artifact/commit/ecb21463e93740a6be75c3116242169bfdbcb15a"><code>ecb2146</code></a>
add compression example</li>
<li><a
href="https://github.com/actions/upload-artifact/commit/5e7604f84a055838f64ed68bb9904751523081ae"><code>5e7604f</code></a>
trim some repeated info</li>
<li><a
href="https://github.com/actions/upload-artifact/commit/d6437d07581fe318a364512e6cf6b1dca6b4f92c"><code>d6437d0</code></a>
naming</li>
<li><a
href="https://github.com/actions/upload-artifact/commit/1b561557037b4957d7d184e9aac02bec86c771eb"><code>1b56155</code></a>
s/v4-beta/v4/g</li>
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Bump actions/setup-python from 4 to 5 (Project-MONAI#7351)
454f89c 
Bumps [actions/setup-python](https://github.com/actions/setup-python)
from 4 to 5.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/actions/setup-python/releases">actions/setup-python's
releases</a>.</em></p>
<blockquote>
<h2>v5.0.0</h2>
<h2>What's Changed</h2>
<p>In scope of this release, we update node version runtime from node16
to node20 (<a
href="https://redirect.github.com/actions/setup-python/pull/772">actions/setup-python#772</a>).
Besides, we update dependencies to the latest versions.</p>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/setup-python/compare/v4.8.0...v5.0.0">https://github.com/actions/setup-python/compare/v4.8.0...v5.0.0</a></p>
<h2>v4.8.0</h2>
<h2>What's Changed</h2>
<p>In scope of this release we added support for GraalPy (<a
href="https://redirect.github.com/actions/setup-python/pull/694">actions/setup-python#694</a>).
You can use this snippet to set up GraalPy:</p>
<pre lang="yaml"><code>steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v4 
  with:
    python-version: 'graalpy-22.3' 
- run: python my_script.py
</code></pre>
<p>Besides, the release contains such changes as:</p>
<ul>
<li>Trim python version when reading from file by <a
href="https://github.com/FerranPares"><code>@​FerranPares</code></a> in
<a
href="https://redirect.github.com/actions/setup-python/pull/628">actions/setup-python#628</a></li>
<li>Use non-deprecated versions in examples by <a
href="https://github.com/jeffwidman"><code>@​jeffwidman</code></a> in <a
href="https://redirect.github.com/actions/setup-python/pull/724">actions/setup-python#724</a></li>
<li>Change deprecation comment to past tense by <a
href="https://github.com/jeffwidman"><code>@​jeffwidman</code></a> in <a
href="https://redirect.github.com/actions/setup-python/pull/723">actions/setup-python#723</a></li>
<li>Bump <code>@​babel/traverse</code> from 7.9.0 to 7.23.2 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/actions/setup-python/pull/743">actions/setup-python#743</a></li>
<li>advanced-usage.md: Encourage the use actions/checkout@v4 by <a
href="https://github.com/cclauss"><code>@​cclauss</code></a> in <a
href="https://redirect.github.com/actions/setup-python/pull/729">actions/setup-python#729</a></li>
<li>Examples now use checkout@v4 by <a
href="https://github.com/simonw"><code>@​simonw</code></a> in <a
href="https://redirect.github.com/actions/setup-python/pull/738">actions/setup-python#738</a></li>
<li>Update actions/checkout to v4 by <a
href="https://github.com/dmitry-shibanov"><code>@​dmitry-shibanov</code></a>
in <a
href="https://redirect.github.com/actions/setup-python/pull/761">actions/setup-python#761</a></li>
</ul>
<h2>New Contributors</h2>
<ul>
<li><a
href="https://github.com/FerranPares"><code>@​FerranPares</code></a>
made their first contribution in <a
href="https://redirect.github.com/actions/setup-python/pull/628">actions/setup-python#628</a></li>
<li><a href="https://github.com/timfel"><code>@​timfel</code></a> made
their first contribution in <a
href="https://redirect.github.com/actions/setup-python/pull/694">actions/setup-python#694</a></li>
<li><a
href="https://github.com/jeffwidman"><code>@​jeffwidman</code></a> made
their first contribution in <a
href="https://redirect.github.com/actions/setup-python/pull/724">actions/setup-python#724</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/setup-python/compare/v4...v4.8.0">https://github.com/actions/setup-python/compare/v4...v4.8.0</a></p>
<h2>v4.7.1</h2>
<h2>What's Changed</h2>
<ul>
<li>Bump word-wrap from 1.2.3 to 1.2.4 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/actions/setup-python/pull/702">actions/setup-python#702</a></li>
<li>Add range validation for toml files by <a
href="https://github.com/dmitry-shibanov"><code>@​dmitry-shibanov</code></a>
in <a
href="https://redirect.github.com/actions/setup-python/pull/726">actions/setup-python#726</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/setup-python/compare/v4...v4.7.1">https://github.com/actions/setup-python/compare/v4...v4.7.1</a></p>
<h2>v4.7.0</h2>
<p>In scope of this release, the support for reading python version from
pyproject.toml was added (<a
href="https://redirect.github.com/actions/setup-python/pull/669">actions/setup-python#669</a>).</p>
<pre lang="yaml"><code>      - name: Setup Python
        uses: actions/setup-python@v4
&lt;/tr&gt;&lt;/table&gt; 
</code></pre>
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/actions/setup-python/commit/0a5c61591373683505ea898e09a3ea4f39ef2b9c"><code>0a5c615</code></a>
Update action to node20 (<a
href="https://redirect.github.com/actions/setup-python/issues/772">#772</a>)</li>
<li><a
href="https://github.com/actions/setup-python/commit/0ae58361cdfd39e2950bed97a1e26aa20c3d8955"><code>0ae5836</code></a>
Add example of GraalPy to docs (<a
href="https://redirect.github.com/actions/setup-python/issues/773">#773</a>)</li>
<li><a
href="https://github.com/actions/setup-python/commit/b64ffcaf5b410884ad320a9cfac8866006a109aa"><code>b64ffca</code></a>
update actions/checkout to v4 (<a
href="https://redirect.github.com/actions/setup-python/issues/761">#761</a>)</li>
<li><a
href="https://github.com/actions/setup-python/commit/8d2896179abf658742de432b3f203d2c2d86a587"><code>8d28961</code></a>
Examples now use checkout@v4 (<a
href="https://redirect.github.com/actions/setup-python/issues/738">#738</a>)</li>
<li><a
href="https://github.com/actions/setup-python/commit/7bc6abb01e0555719edc2dbca70a2fde309e5e56"><code>7bc6abb</code></a>
advanced-usage.md: Encourage the use actions/checkout@v4 (<a
href="https://redirect.github.com/actions/setup-python/issues/729">#729</a>)</li>
<li><a
href="https://github.com/actions/setup-python/commit/e8111cec9d3dc15220d8a3b638f08419f57b906a"><code>e8111ce</code></a>
Bump <code>@​babel/traverse</code> from 7.9.0 to 7.23.2 (<a
href="https://redirect.github.com/actions/setup-python/issues/743">#743</a>)</li>
<li><a
href="https://github.com/actions/setup-python/commit/a00ea43da65e7c04d2bdae58b3afecd77057eb9e"><code>a00ea43</code></a>
add fix for graalpy ci (<a
href="https://redirect.github.com/actions/setup-python/issues/741">#741</a>)</li>
<li><a
href="https://github.com/actions/setup-python/commit/8635b1ccc5934e73ed3510980fd2e7790b85839b"><code>8635b1c</code></a>
Change deprecation comment to past tense (<a
href="https://redirect.github.com/actions/setup-python/issues/723">#723</a>)</li>
<li><a
href="https://github.com/actions/setup-python/commit/f6cc428f535856f9c23558d01765a42a4d6cf758"><code>f6cc428</code></a>
Use non-deprecated versions in examples (<a
href="https://redirect.github.com/actions/setup-python/issues/724">#724</a>)</li>
<li><a
href="https://github.com/actions/setup-python/commit/5f2af211d616f86005883b44826180b21abb4060"><code>5f2af21</code></a>
Add GraalPy support (<a
href="https://redirect.github.com/actions/setup-python/issues/694">#694</a>)</li>
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Bump actions/download-artifact from 3 to 4 (Project-MONAI#7352)
db6e81d 
Bumps
[actions/download-artifact](https://github.com/actions/download-artifact)
from 3 to 4.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/actions/download-artifact/releases">actions/download-artifact's
releases</a>.</em></p>
<blockquote>
<h2>v4.0.0</h2>
<h2>What's Changed</h2>
<p>The release of upload-artifact@v4 and download-artifact@v4 are major
changes to the backend architecture of Artifacts. They have numerous
performance and behavioral improvements.</p>
<p>For more information, see the <a
href="https://github.com/actions/toolkit/tree/main/packages/artifact"><code>@​actions/artifact</code></a>
documentation.</p>
<h2>New Contributors</h2>
<ul>
<li><a href="https://github.com/bflad"><code>@​bflad</code></a> made
their first contribution in <a
href="https://redirect.github.com/actions/download-artifact/pull/194">actions/download-artifact#194</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/download-artifact/compare/v3...v4.0.0">https://github.com/actions/download-artifact/compare/v3...v4.0.0</a></p>
<h2>v3.0.2</h2>
<ul>
<li>Bump <code>@actions/artifact</code> to v1.1.1 - <a
href="https://redirect.github.com/actions/download-artifact/pull/195">actions/download-artifact#195</a></li>
<li>Fixed a bug in Node16 where if an HTTP download finished too quickly
(&lt;1ms, e.g. when it's mocked) we attempt to delete a temp file that
has not been created yet <a
href="hhttps://redirect.github.com/actions/toolkit/pull/1278">actions/toolkit#1278</a></li>
</ul>
<h2>v3.0.1</h2>
<ul>
<li><a
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Merge pull request <a
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<li><a
href="https://github.com/actions/download-artifact/commit/3181fe853d2c9a606cd326853bf4c5b8ced5df02"><code>3181fe8</code></a>
add some migration docs</li>
<li><a
href="https://github.com/actions/download-artifact/commit/aaaac7b403f278b6b7eebdca69ca1658616f1c57"><code>aaaac7b</code></a>
licensed cache</li>
<li><a
href="https://github.com/actions/download-artifact/commit/7c9182f0e18dadedfbca3189ab7a22a416aa6714"><code>7c9182f</code></a>
update readme</li>
<li><a
href="https://github.com/actions/download-artifact/commit/b94e7015566b40b2de5eeeda514f239968da2dd7"><code>b94e701</code></a>
licensed cache</li>
<li><a
href="https://github.com/actions/download-artifact/commit/0b55470e40ab7435f445813ebc18b1107ecf7e32"><code>0b55470</code></a>
add test case for globbed downloads to same directory</li>
<li><a
href="https://github.com/actions/download-artifact/commit/0b51c2ef9042b581aded9711127e4a6d5f71c550"><code>0b51c2e</code></a>
update prettier/eslint versions</li>
<li><a
href="https://github.com/actions/download-artifact/commit/c4c6db724f9510b2b3cff5ebcc417c87a2b2fa97"><code>c4c6db7</code></a>
support globbing artifact list &amp; merging download directory</li>
<li><a
href="https://github.com/actions/download-artifact/commit/1bd0606e08fcaa4c28afc1fc7d45830ab5482dac"><code>1bd0606</code></a>
Merge pull request <a
href="https://redirect.github.com/actions/download-artifact/issues/252">#252</a>
from stchr/patch-1</li>
<li><a
href="https://github.com/actions/download-artifact/commit/eff4d42b1f6ff704c7a0f37152ed8793673560ef"><code>eff4d42</code></a>
fix default for run-id</li>
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@dependabot
Bump peter-evans/slash-command-dispatch from 3.0.1 to 3.0.2 (Project-…
8fa6931 
…MONAI#7353)

Bumps
[peter-evans/slash-command-dispatch](https://github.com/peter-evans/slash-command-dispatch)
from 3.0.1 to 3.0.2.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/peter-evans/slash-command-dispatch/releases">peter-evans/slash-command-dispatch's
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<blockquote>
<h2>Slash Command Dispatch v3.0.2</h2>
<h2>What's Changed</h2>
<ul>
<li>fix: replace use of any type by <a
href="https://github.com/peter-evans"><code>@​peter-evans</code></a> in
<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/152">peter-evans/slash-command-dispatch#152</a></li>
<li>fixing link to <code>Get a pull request</code> by <a
href="https://github.com/Borda"><code>@​Borda</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/270">peter-evans/slash-command-dispatch#270</a></li>
<li>Update getting-started.md due to changes in Github UI by <a
href="https://github.com/martin-displayr"><code>@​martin-displayr</code></a>
in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/289">peter-evans/slash-command-dispatch#289</a></li>
<li>[Security] Fix GraphQL query to get a collaborator's permission by
<a href="https://github.com/0xn3va"><code>@​0xn3va</code></a> in <a
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href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/301">peter-evans/slash-command-dispatch#301</a></li>
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<ul>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/f996d7b7aae9059759ac55e978cff76d91853301"><code>f996d7b</code></a>
Fix the CollaboratorPermission GraphQL query (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/301">#301</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/05b97d641c7ed206082e7984193d314070260d44"><code>05b97d6</code></a>
build(deps-dev): bump <code>@​types/node</code> from 16.18.65 to
16.18.67 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/300">#300</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/8e7007329b5b0d971d44b9558606eed52edbdda6"><code>8e70073</code></a>
build(deps-dev): bump eslint from 8.54.0 to 8.55.0 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/299">#299</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/bd00135609f8bb0e709eea67f2a294f928fd1e7a"><code>bd00135</code></a>
build(deps-dev): bump <code>@​types/node</code> from 16.18.62 to
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href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/298">#298</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/ee873b6d3d1e6ae67120bcfb3e807c1d11502741"><code>ee873b6</code></a>
build(deps-dev): bump eslint from 8.53.0 to 8.54.0 (<a
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<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/44abc47f988dc0de6261fb54747b79de67b6af0d"><code>44abc47</code></a>
build(deps-dev): bump <code>@​types/node</code> from 16.18.61 to
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<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/19ad7b830c1554acf2ccefe7f3ff5566750d5e9b"><code>19ad7b8</code></a>
build(deps-dev): bump <code>@​types/node</code> from 16.18.60 to
16.18.61 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/294">#294</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/29a9815e9ffe9a5b9b4367e4b76770bcb468a7e7"><code>29a9815</code></a>
build(deps-dev): bump prettier from 3.0.3 to 3.1.0 (<a
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<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/ade03097a3cb6e69e3ed86210ec745493dacf6bc"><code>ade0309</code></a>
build(deps-dev): bump eslint from 8.52.0 to 8.53.0 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/292">#292</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/fc8222e6761738cc303ace6ed030f7fe63d6da0c"><code>fc8222e</code></a>
build(deps-dev): bump <code>@​types/node</code> from 16.18.59 to
16.18.60 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/291">#291</a>)</li>
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@KumoLiu @ericspod
Give more useful exception when batch is considered during matrix mul…
445d750 
…tiplication (Project-MONAI#7326)

Fixes Project-MONAI#7323

### Description

Give more useful exception when batch is considered during matrix
multiplication.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
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---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
@KumoLiu
Fix incorrectly size compute in auto3dseg analyzer (Project-MONAI#7374)
d7137cf 
Fixes Project-MONAI#7222

### Description
remove int convert here.

https://github.com/Project-MONAI/MONAI/blob/8fa6931b14ba9617a595fff1d396ac44cc82e207/monai/auto3dseg/analyzer.py#L259

### Types of changes
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Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@kvttt
7380 mention demo in bending energy and diffusion docstrings (Project…
e1ffa7e 
…-MONAI#7381)

Fixes Project-MONAI#7380.

### Description

Mention
[demo](https://github.com/Project-MONAI/tutorials/blob/main/modules/bending_energy_diffusion_loss_notes.ipynb)
in bending energy and diffusion docstrings.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
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- [ ] In-line docstrings updated.
- [x] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: kaibo <ktang@unc.edu>
@KumoLiu
Pin gdown version to v4.6.3 (Project-MONAI#7384)
25f1901 
Workaround for Project-MONAI#7382 Project-MONAI#7383

### Description

Based on the comment
[here](wkentaro/gdown#291 (comment)),
pin the gdown version as a workaround. Will review this one once gdown
has some update internal.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
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--net --coverage`.
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--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@KumoLiu
Fix Premerge (Project-MONAI#7397)
78295c7 
Fixes Project-MONAI#7396


### Types of changes
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- [x] Non-breaking change (fix or new feature that would not break
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- [ ] Breaking change (fix or new feature that would cause existing
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- [ ] Integration tests passed locally by running `./runtests.sh -f -u
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--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@vlaminckaxel
Track applied operations in image filter (Project-MONAI#7395)
80be1c3 
Fixes Project-MONAI#7394 

### Description

When ImageFilter is in the transformation sequence it didn't pass the
applied_operations.
Now it is passed when present.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
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- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
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- [x] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: axel.vlaminck <axel.vlaminck@gmail.com>
@KumoLiu @ericspod @pre-commit-ci
Add compile support in SupervisedTrainer and SupervisedEvaluator (
facf176 
Project-MONAI#7375)

Fixes # .

### Description

Add `compile` support in `SupervisedTrainer` and `SupervisedEvaluator`.
Convert to `torch.Tensor` internally.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
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existing functionality).
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- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@KumoLiu @pre-commit-ci
Fix CUDA_VISIBLE_DEVICES setting ignored (Project-MONAI#7408)
abe2e31 
Fixes Project-MONAI#7407

### Description

Move `optional import cucim` inside the function to avoid using all
GPUs.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
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- [ ] Breaking change (fix or new feature that would cause existing
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- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@KumoLiu
Fix Incorrect updated affine in NrrdReader and update docstring in …
6c9e49e 
…`ITKReader` (Project-MONAI#7415)

Fixes Project-MONAI#7414
Fixes Project-MONAI#7371


### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
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- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@KumoLiu
Ignore E704 after update black (Project-MONAI#7422)
df4cf92 
Fixes Project-MONAI#7421

### Description
https://pypi.org/project/black/24.1.1/

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
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- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@KumoLiu
update rm -rf /opt/hostedtoolcache avoid change the python version (P…
cd36c1c 
…roject-MONAI#7424)

Fixes Project-MONAI#7416

### Description

update `rm -rf /opt/hostedtoolcache` avoid change the python version

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@dependabot
Bump peter-evans/slash-command-dispatch from 3.0.2 to 4.0.0 (Project-…
6def75e 
…MONAI#7428)

Bumps
[peter-evans/slash-command-dispatch](https://github.com/peter-evans/slash-command-dispatch)
from 3.0.2 to 4.0.0.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/peter-evans/slash-command-dispatch/releases">peter-evans/slash-command-dispatch's
releases</a>.</em></p>
<blockquote>
<h2>Slash Command Dispatch v4.0.0</h2>
<p>⚙️  Updated runtime to Node.js 20</p>
<ul>
<li>The action now requires a minimum version of <a
href="https://github.com/actions/runner/releases/tag/v2.308.0">v2.308.0</a>
for the Actions runner. Update self-hosted runners to v2.308.0 or later
to ensure compatibility.</li>
</ul>
<h2>What's Changed</h2>
<ul>
<li>build(deps-dev): bump <code>@​types/node</code> from 16.18.67 to
16.18.68 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/302">peter-evans/slash-command-dispatch#302</a></li>
<li>build(deps-dev): bump prettier from 3.1.0 to 3.1.1 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/303">peter-evans/slash-command-dispatch#303</a></li>
<li>build(deps-dev): bump jest-circus from 27.4.2 to 27.5.1 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/176">peter-evans/slash-command-dispatch#176</a></li>
<li>build(deps): bump actions/download-artifact from 3 to 4 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/304">peter-evans/slash-command-dispatch#304</a></li>
<li>build(deps): bump actions/upload-artifact from 3 to 4 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/305">peter-evans/slash-command-dispatch#305</a></li>
<li>build(deps-dev): bump eslint from 8.55.0 to 8.56.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/306">peter-evans/slash-command-dispatch#306</a></li>
<li>build(deps-dev): bump eslint-plugin-prettier from 5.0.1 to 5.1.2 by
<a href="https://github.com/dependabot"><code>@​dependabot</code></a> in
<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/308">peter-evans/slash-command-dispatch#308</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 16.18.68 to
16.18.69 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/309">peter-evans/slash-command-dispatch#309</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 16.18.69 to
16.18.70 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/310">peter-evans/slash-command-dispatch#310</a></li>
<li>build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 by
<a href="https://github.com/dependabot"><code>@​dependabot</code></a> in
<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/311">peter-evans/slash-command-dispatch#311</a></li>
<li>build(deps-dev): bump prettier from 3.1.1 to 3.2.2 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/312">peter-evans/slash-command-dispatch#312</a></li>
<li>build(deps-dev): bump prettier from 3.2.2 to 3.2.4 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/314">peter-evans/slash-command-dispatch#314</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 16.18.70 to
16.18.74 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/315">peter-evans/slash-command-dispatch#315</a></li>
<li>build(deps): bump peter-evans/create-or-update-comment from 3 to 4
by <a href="https://github.com/dependabot"><code>@​dependabot</code></a>
in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/317">peter-evans/slash-command-dispatch#317</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 16.18.74 to
16.18.76 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/318">peter-evans/slash-command-dispatch#318</a></li>
<li>feat: update runtime to node 20 by <a
href="https://github.com/peter-evans"><code>@​peter-evans</code></a> in
<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/316">peter-evans/slash-command-dispatch#316</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.2...v4.0.0">https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.2...v4.0.0</a></p>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/13bc09769d122a64f75aa5037256f6f2d78be8c4"><code>13bc097</code></a>
feat: update runtime to node 20 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/316">#316</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/128d8b927253aae5457641113bd796a851741cda"><code>128d8b9</code></a>
build(deps-dev): bump <code>@​types/node</code> from 16.18.74 to
16.18.76 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/318">#318</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/df481df93d05f3a8098480367110c4ada97af98b"><code>df481df</code></a>
build(deps): bump peter-evans/create-or-update-comment from 3 to 4 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/317">#317</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/d4579a0d226a3b6e976c29c768ccee3af222d281"><code>d4579a0</code></a>
build(deps-dev): bump <code>@​types/node</code> from 16.18.70 to
16.18.74 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/315">#315</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/8f053eaa2e080b0369bdd513c863dd7b147abfbe"><code>8f053ea</code></a>
build(deps-dev): bump prettier from 3.2.2 to 3.2.4 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/314">#314</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/b3eb7837603d93c13112e589f373861dd9092f17"><code>b3eb783</code></a>
build(deps-dev): bump prettier from 3.1.1 to 3.2.2 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/312">#312</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/c0334d0fedf1c486175ac2a034431ce86ca29a5e"><code>c0334d0</code></a>
build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/311">#311</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/e627c61300384b5d34daa0160cec6013fdcae2f2"><code>e627c61</code></a>
build(deps-dev): bump <code>@​types/node</code> from 16.18.69 to
16.18.70 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/310">#310</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/5c23a33777cbce2760bfa697c816d136b265f92a"><code>5c23a33</code></a>
build(deps-dev): bump <code>@​types/node</code> from 16.18.68 to
16.18.69 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/309">#309</a>)</li>
<li><a
href="https://github.com/peter-evans/slash-command-dispatch/commit/8dd62d5c459412393c923fd6a95342e1838b331b"><code>8dd62d5</code></a>
build(deps-dev): bump eslint-plugin-prettier from 5.0.1 to 5.1.2 (<a
href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/308">#308</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.2...v4.0.0">compare
view</a></li>
</ul>
</details>
<br />


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@dependabot
Bump peter-evans/create-or-update-comment from 3 to 4 (Project-MONAI#…
6ea3e39 
…7429)

Bumps
[peter-evans/create-or-update-comment](https://github.com/peter-evans/create-or-update-comment)
from 3 to 4.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/peter-evans/create-or-update-comment/releases">peter-evans/create-or-update-comment's
releases</a>.</em></p>
<blockquote>
<h2>Create or Update Comment v4.0.0</h2>
<p>⚙️  Updated runtime to Node.js 20</p>
<ul>
<li>The action now requires a minimum version of <a
href="https://github.com/actions/runner/releases/tag/v2.308.0">v2.308.0</a>
for the Actions runner. Update self-hosted runners to v2.308.0 or later
to ensure compatibility.</li>
</ul>
<h2>What's Changed</h2>
<ul>
<li>build(deps): bump actions/setup-node from 3 to 4 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/273">peter-evans/create-or-update-comment#273</a></li>
<li>build(deps-dev): bump <code>@​vercel/ncc</code> from 0.38.0 to
0.38.1 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/274">peter-evans/create-or-update-comment#274</a></li>
<li>build(deps-dev): bump eslint-plugin-jest from 27.4.2 to 27.4.3 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/276">peter-evans/create-or-update-comment#276</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 18.18.5 to
18.18.6 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/277">peter-evans/create-or-update-comment#277</a></li>
<li>build(deps-dev): bump eslint from 8.51.0 to 8.52.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/275">peter-evans/create-or-update-comment#275</a></li>
<li>build(deps-dev): bump eslint-plugin-jest from 27.4.3 to 27.6.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/278">peter-evans/create-or-update-comment#278</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 18.18.6 to
18.18.8 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/279">peter-evans/create-or-update-comment#279</a></li>
<li>build(deps-dev): bump eslint from 8.52.0 to 8.53.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/280">peter-evans/create-or-update-comment#280</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 18.18.8 to
18.18.9 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/281">peter-evans/create-or-update-comment#281</a></li>
<li>build(deps-dev): bump prettier from 3.0.3 to 3.1.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/282">peter-evans/create-or-update-comment#282</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 18.18.9 to
18.18.12 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/283">peter-evans/create-or-update-comment#283</a></li>
<li>build(deps-dev): bump eslint from 8.53.0 to 8.54.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/284">peter-evans/create-or-update-comment#284</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 18.18.12 to
18.18.13 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/285">peter-evans/create-or-update-comment#285</a></li>
<li>build(deps-dev): bump eslint from 8.54.0 to 8.55.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/286">peter-evans/create-or-update-comment#286</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 18.18.13 to
18.19.2 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/287">peter-evans/create-or-update-comment#287</a></li>
<li>build(deps): bump chuhlomin/render-template from 1.8 to 1.9 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/288">peter-evans/create-or-update-comment#288</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 18.19.2 to
18.19.3 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/289">peter-evans/create-or-update-comment#289</a></li>
<li>build(deps-dev): bump prettier from 3.1.0 to 3.1.1 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/290">peter-evans/create-or-update-comment#290</a></li>
<li>build(deps-dev): bump eslint-plugin-prettier from 5.0.1 to 5.1.0 by
<a href="https://github.com/dependabot"><code>@​dependabot</code></a> in
<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/292">peter-evans/create-or-update-comment#292</a></li>
<li>build(deps-dev): bump eslint from 8.55.0 to 8.56.0 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/293">peter-evans/create-or-update-comment#293</a></li>
<li>build(deps): bump actions/download-artifact from 3 to 4 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/295">peter-evans/create-or-update-comment#295</a></li>
<li>build(deps-dev): bump eslint-plugin-prettier from 5.1.0 to 5.1.2 by
<a href="https://github.com/dependabot"><code>@​dependabot</code></a> in
<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/296">peter-evans/create-or-update-comment#296</a></li>
<li>build(deps-dev): bump eslint-plugin-jest from 27.6.0 to 27.6.1 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/297">peter-evans/create-or-update-comment#297</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 18.19.3 to
18.19.4 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/298">peter-evans/create-or-update-comment#298</a></li>
<li>build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 by
<a href="https://github.com/dependabot"><code>@​dependabot</code></a> in
<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/299">peter-evans/create-or-update-comment#299</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 18.19.4 to
18.19.6 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/300">peter-evans/create-or-update-comment#300</a></li>
<li>build(deps-dev): bump prettier from 3.1.1 to 3.2.3 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/301">peter-evans/create-or-update-comment#301</a></li>
<li>build(deps-dev): bump eslint-plugin-jest from 27.6.1 to 27.6.3 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/302">peter-evans/create-or-update-comment#302</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 18.19.6 to
18.19.7 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/303">peter-evans/create-or-update-comment#303</a></li>
<li>build(deps-dev): bump <code>@​types/node</code> from 18.19.7 to
18.19.8 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/304">peter-evans/create-or-update-comment#304</a></li>
<li>build(deps-dev): bump prettier from 3.2.3 to 3.2.4 by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a> in <a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/305">peter-evans/create-or-update-comment#305</a></li>
<li>feat: update runtime to node 20 by <a
href="https://github.com/peter-evans"><code>@​peter-evans</code></a> in
<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/306">peter-evans/create-or-update-comment#306</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/peter-evans/create-or-update-comment/compare/v3.1.0...v4.0.0">https://github.com/peter-evans/create-or-update-comment/compare/v3.1.0...v4.0.0</a></p>
<h2>Create or Update Comment v3.1.0</h2>
<h2>What's Changed</h2>
<ul>
<li>Add truncate warning to body of comment by <a
href="https://github.com/ethanmdavidson"><code>@​ethanmdavidson</code></a>
and <a
href="https://github.com/peter-evans"><code>@​peter-evans</code></a> in
<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/272">peter-evans/create-or-update-comment#272</a></li>
<li>46 dependency updates by <a
href="https://github.com/dependabot"><code>@​dependabot</code></a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/peter-evans/create-or-update-comment/compare/v3.0.2...v3.1.0">https://github.com/peter-evans/create-or-update-comment/compare/v3.0.2...v3.1.0</a></p>
<h2>Create or Update Comment v3.0.2</h2>
<h2>What's Changed</h2>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/peter-evans/create-or-update-comment/commit/71345be0265236311c031f5c7866368bd1eff043"><code>71345be</code></a>
feat: update runtime to node 20 (<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/306">#306</a>)</li>
<li><a
href="https://github.com/peter-evans/create-or-update-comment/commit/d41bfe36e5af6ca183ce8b04db32e4aa6412e693"><code>d41bfe3</code></a>
build(deps-dev): bump prettier from 3.2.3 to 3.2.4 (<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/305">#305</a>)</li>
<li><a
href="https://github.com/peter-evans/create-or-update-comment/commit/73b4b9e4e37f8cbefbb82ca2abd9085a1afa1562"><code>73b4b9e</code></a>
build(deps-dev): bump <code>@​types/node</code> from 18.19.7 to 18.19.8
(<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/304">#304</a>)</li>
<li><a
href="https://github.com/peter-evans/create-or-update-comment/commit/b865fac7facb67bed02e0032aedefe6acf790c75"><code>b865fac</code></a>
build(deps-dev): bump <code>@​types/node</code> from 18.19.6 to 18.19.7
(<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/303">#303</a>)</li>
<li><a
href="https://github.com/peter-evans/create-or-update-comment/commit/52b668a9280a255397527f4131ff02f5005274c8"><code>52b668a</code></a>
build(deps-dev): bump eslint-plugin-jest from 27.6.1 to 27.6.3 (<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/302">#302</a>)</li>
<li><a
href="https://github.com/peter-evans/create-or-update-comment/commit/974f56a1c3e9a9d05f2847c575dccf35c038e80e"><code>974f56a</code></a>
build(deps-dev): bump prettier from 3.1.1 to 3.2.3 (<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/301">#301</a>)</li>
<li><a
href="https://github.com/peter-evans/create-or-update-comment/commit/2cbfe8b17bb3ba59cdb477ae1d88d14caa96100e"><code>2cbfe8b</code></a>
build(deps-dev): bump <code>@​types/node</code> from 18.19.4 to 18.19.6
(<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/300">#300</a>)</li>
<li><a
href="https://github.com/peter-evans/create-or-update-comment/commit/761872a701dedf6fcfe4c794d7e117dfbba8a4fb"><code>761872a</code></a>
build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 (<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/299">#299</a>)</li>
<li><a
href="https://github.com/peter-evans/create-or-update-comment/commit/72c3238a4904d35331b8ad94c0eb21d799fb86c4"><code>72c3238</code></a>
build(deps-dev): bump <code>@​types/node</code> from 18.19.3 to 18.19.4
(<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/298">#298</a>)</li>
<li><a
href="https://github.com/peter-evans/create-or-update-comment/commit/07daf7bbdb1bf17ee35e4a8f3a541ecb83c0253d"><code>07daf7b</code></a>
build(deps-dev): bump eslint-plugin-jest from 27.6.0 to 27.6.1 (<a
href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/297">#297</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/peter-evans/create-or-update-comment/compare/v3...v4">compare
view</a></li>
</ul>
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Bump actions/cache from 3 to 4 (Project-MONAI#7430)
5301443 
Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/actions/cache/releases">actions/cache's
releases</a>.</em></p>
<blockquote>
<h2>v4.0.0</h2>
<h2>What's Changed</h2>
<ul>
<li>Update action to node20 by <a
href="https://github.com/takost"><code>@​takost</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1284">actions/cache#1284</a></li>
<li>feat: save-always flag by <a
href="https://github.com/to-s"><code>@​to-s</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1242">actions/cache#1242</a></li>
</ul>
<h2>New Contributors</h2>
<ul>
<li><a href="https://github.com/takost"><code>@​takost</code></a> made
their first contribution in <a
href="https://redirect.github.com/actions/cache/pull/1284">actions/cache#1284</a></li>
<li><a href="https://github.com/to-s"><code>@​to-s</code></a> made their
first contribution in <a
href="https://redirect.github.com/actions/cache/pull/1242">actions/cache#1242</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/cache/compare/v3...v4.0.0">https://github.com/actions/cache/compare/v3...v4.0.0</a></p>
<h2>v3.3.3</h2>
<h2>What's Changed</h2>
<ul>
<li>Cache v3.3.3 by <a
href="https://github.com/robherley"><code>@​robherley</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1302">actions/cache#1302</a></li>
</ul>
<h2>New Contributors</h2>
<ul>
<li><a href="https://github.com/robherley"><code>@​robherley</code></a>
made their first contribution in <a
href="https://redirect.github.com/actions/cache/pull/1302">actions/cache#1302</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/cache/compare/v3...v3.3.3">https://github.com/actions/cache/compare/v3...v3.3.3</a></p>
<h2>v3.3.2</h2>
<h2>What's Changed</h2>
<ul>
<li>Fixed readme with new segment timeout values by <a
href="https://github.com/kotewar"><code>@​kotewar</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1133">actions/cache#1133</a></li>
<li>Readme fixes by <a
href="https://github.com/kotewar"><code>@​kotewar</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1134">actions/cache#1134</a></li>
<li>Updated description of the lookup-only input for main action by <a
href="https://github.com/kotewar"><code>@​kotewar</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1130">actions/cache#1130</a></li>
<li>Change two new actions mention as quoted text by <a
href="https://github.com/bishal-pdMSFT"><code>@​bishal-pdMSFT</code></a>
in <a
href="https://redirect.github.com/actions/cache/pull/1131">actions/cache#1131</a></li>
<li>Update Cross-OS Caching tips by <a
href="https://github.com/pdotl"><code>@​pdotl</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1122">actions/cache#1122</a></li>
<li>Bazel example (Take <a
href="https://redirect.github.com/actions/cache/issues/2">#2</a>️⃣) by
<a href="https://github.com/vorburger"><code>@​vorburger</code></a> in
<a
href="https://redirect.github.com/actions/cache/pull/1132">actions/cache#1132</a></li>
<li>Remove actions to add new PRs and issues to a project board by <a
href="https://github.com/jorendorff"><code>@​jorendorff</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1187">actions/cache#1187</a></li>
<li>Consume latest toolkit and fix dangling promise bug by <a
href="https://github.com/chkimes"><code>@​chkimes</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1217">actions/cache#1217</a></li>
<li>Bump action version to 3.3.2 by <a
href="https://github.com/bethanyj28"><code>@​bethanyj28</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1236">actions/cache#1236</a></li>
</ul>
<h2>New Contributors</h2>
<ul>
<li><a href="https://github.com/vorburger"><code>@​vorburger</code></a>
made their first contribution in <a
href="https://redirect.github.com/actions/cache/pull/1132">actions/cache#1132</a></li>
<li><a
href="https://github.com/jorendorff"><code>@​jorendorff</code></a> made
their first contribution in <a
href="https://redirect.github.com/actions/cache/pull/1187">actions/cache#1187</a></li>
<li><a href="https://github.com/chkimes"><code>@​chkimes</code></a> made
their first contribution in <a
href="https://redirect.github.com/actions/cache/pull/1217">actions/cache#1217</a></li>
<li><a
href="https://github.com/bethanyj28"><code>@​bethanyj28</code></a> made
their first contribution in <a
href="https://redirect.github.com/actions/cache/pull/1236">actions/cache#1236</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/cache/compare/v3...v3.3.2">https://github.com/actions/cache/compare/v3...v3.3.2</a></p>
<h2>v3.3.1</h2>
<h2>What's Changed</h2>
<ul>
<li>Reduced download segment size to 128 MB and timeout to 10 minutes by
<a href="https://github.com/kotewar"><code>@​kotewar</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1129">actions/cache#1129</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a
href="https://github.com/actions/cache/compare/v3...v3.3.1">https://github.com/actions/cache/compare/v3...v3.3.1</a></p>
<h2>v3.3.0</h2>
<h2>What's Changed</h2>
<ul>
<li>Bug: Permission is missing in cache delete example by <a
href="https://github.com/kotokaze"><code>@​kotokaze</code></a> in <a
href="https://redirect.github.com/actions/cache/pull/1123">actions/cache#1123</a></li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/actions/cache/blob/main/RELEASES.md">actions/cache's
changelog</a>.</em></p>
<blockquote>
<h1>Releases</h1>
<h3>3.0.0</h3>
<ul>
<li>Updated minimum runner version support from node 12 -&gt; node
16</li>
</ul>
<h3>3.0.1</h3>
<ul>
<li>Added support for caching from GHES 3.5.</li>
<li>Fixed download issue for files &gt; 2GB during restore.</li>
</ul>
<h3>3.0.2</h3>
<ul>
<li>Added support for dynamic cache size cap on GHES.</li>
</ul>
<h3>3.0.3</h3>
<ul>
<li>Fixed avoiding empty cache save when no files are available for
caching. (<a
href="https://redirect.github.com/actions/cache/issues/624">issue</a>)</li>
</ul>
<h3>3.0.4</h3>
<ul>
<li>Fixed tar creation error while trying to create tar with path as
<code>~/</code> home folder on <code>ubuntu-latest</code>. (<a
href="https://redirect.github.com/actions/cache/issues/689">issue</a>)</li>
</ul>
<h3>3.0.5</h3>
<ul>
<li>Removed error handling by consuming actions/cache 3.0 toolkit, Now
cache server error handling will be done by toolkit. (<a
href="https://redirect.github.com/actions/cache/pull/834">PR</a>)</li>
</ul>
<h3>3.0.6</h3>
<ul>
<li>Fixed <a
href="https://redirect.github.com/actions/cache/issues/809">#809</a> -
zstd -d: no such file or directory error</li>
<li>Fixed <a
href="https://redirect.github.com/actions/cache/issues/833">#833</a> -
cache doesn't work with github workspace directory</li>
</ul>
<h3>3.0.7</h3>
<ul>
<li>Fixed <a
href="https://redirect.github.com/actions/cache/issues/810">#810</a> -
download stuck issue. A new timeout is introduced in the download
process to abort the download if it gets stuck and doesn't finish within
an hour.</li>
</ul>
<h3>3.0.8</h3>
<ul>
<li>Fix zstd not working for windows on gnu tar in issues <a
href="https://redirect.github.com/actions/cache/issues/888">#888</a> and
<a
href="https://redirect.github.com/actions/cache/issues/891">#891</a>.</li>
<li>Allowing users to provide a custom timeout as input for aborting
download of a cache segment using an environment variable
<code>SEGMENT_DOWNLOAD_TIMEOUT_MINS</code>. Default is 60 minutes.</li>
</ul>
<h3>3.0.9</h3>
<ul>
<li>Enhanced the warning message for cache unavailablity in case of
GHES.</li>
</ul>
<h3>3.0.10</h3>
<ul>
<li>Fix a bug with sorting inputs.</li>
<li>Update definition for restore-keys in README.md</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/actions/cache/commit/13aacd865c20de90d75de3b17ebe84f7a17d57d2"><code>13aacd8</code></a>
Merge pull request <a
href="https://redirect.github.com/actions/cache/issues/1242">#1242</a>
from to-s/main</li>
<li><a
href="https://github.com/actions/cache/commit/53b35c543921fe2e8b288765ff817de9de8d906f"><code>53b35c5</code></a>
Merge branch 'main' into main</li>
<li><a
href="https://github.com/actions/cache/commit/65b8989fab3bb394817bdb845a453dff480c2b51"><code>65b8989</code></a>
Merge pull request <a
href="https://redirect.github.com/actions/cache/issues/1284">#1284</a>
from takost/update-to-node-20</li>
<li><a
href="https://github.com/actions/cache/commit/d0be34d54485f31ca2ccbe66e6ea3d96544a807b"><code>d0be34d</code></a>
Fix dist</li>
<li><a
href="https://github.com/actions/cache/commit/66cf064d47313d2cccf392d01bd10925da2bd072"><code>66cf064</code></a>
Merge branch 'main' into update-to-node-20</li>
<li><a
href="https://github.com/actions/cache/commit/1326563738ddb735c5f2ce85cba8c79f33b728cd"><code>1326563</code></a>
Merge branch 'main' into main</li>
<li><a
href="https://github.com/actions/cache/commit/e71876755e268d6cc25a5d3e3c46ae447e35290a"><code>e718767</code></a>
Fix format</li>
<li><a
href="https://github.com/actions/cache/commit/01229828ffa049a8dee4db27bcb23ed33f2b451f"><code>0122982</code></a>
Apply workaround for earlyExit</li>
<li><a
href="https://github.com/actions/cache/commit/3185ecfd6135856ca6d904ae032cff4f39b8b365"><code>3185ecf</code></a>
Update &quot;only-&quot; actions to node20</li>
<li><a
href="https://github.com/actions/cache/commit/25618a0a675e8447e5ffc8ed9b7ddb2aaf927f65"><code>25618a0</code></a>
Bump version</li>
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marksgraham and others added 9 commits May 7, 2024 15:48
@marksgraham
Add compatability tests
6831413 
Signed-off-by: Mark Graham <markgraham539@gmail.com>
@simojens
Fixed misguiding weight mode documentation (Project-MONAI#7746)
ecaf5a1 
### Description

DeepSupervisionLoss has a small typo in the documentation for 'exp'
weight mode. The correct weights for this mode should be starting at 1,
not 0 and then decrease by power of two. Might be worth fixing as it
made me check the source code.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
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- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

Signed-off-by: Simon Jensen <61684806+simojens@users.noreply.github.com>
@marksgraham
Adds ref for causal attention and allows user to specify attention dtype
3a64373 
Signed-off-by: Mark Graham <markgraham539@gmail.com>
@marksgraham
Attention dtype
ce4a5bd 
Signed-off-by: Mark Graham <markgraham539@gmail.com>
@marksgraham
Attention dtype
7f6319e 
Signed-off-by: Mark Graham <markgraham539@gmail.com>
@KumoLiu @ericspod
Enhance logging logic in ConfigWorkflow (Project-MONAI#7745)
32b7754 
When using nvflare with monai bundle, the logging logic may be overrided
by the logging logic in the bundle.
Add an option to disable logging logic in the bundle.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
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- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
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folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
@KumoLiu
Add version requirement for filelock and nni (Project-MONAI#7744)
f278e51 
Add version requirement for filelock and nni

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@NabJa @KumoLiu
Add dimensionality of heads argument to SABlock (Project-MONAI#7664)
d83fa56 
Fixes Project-MONAI#7661.

### Description

The changes made add a parameter (_dim_head_) to set the output
paramters of all the heads in the Self-attention Block (SABlock).
Currently the output dimension is set to be _hidden_size_ and when
increasing the number of heads this is equally distributed among all
heads.

### Example
The original implementation automatically determines
**_equally_distributed_head_dim_**:
(qkv * num_heds * equally_distributed_head_dim = 3*hidden_size   
in this example  ->  3 * 8 * 16 = 384)
``` 
block = SABlock(hidden_size=128, num_heads=8)
x = torch.zeros(1, 256, 128)
x = block.qkv(x)
print(x.shape)
x = block.input_rearrange(x)
print(x.shape)

> torch.Size([1, 256, 384])
> torch.Size([3, 1, 8, 256, 16]) # <- This corresponds to (qkv batch num_heads sequence_length equally_distributed_head_dim)
```

The propesed implementation fixes this by setting the new argument
**_dim_head_:**
``` 
block_new = SABlock(hidden_size=128, num_heads=8, dim_head=32)
x = torch.zeros(1, 256, 128)
x = block_new.qkv(x)
print(x.shape)
x = block_new.input_rearrange(x)
print(x.shape)

> torch.Size([1, 256, 384])
> torch.Size([3, 1, 8, 256, 32]) # <- This corresponds to (qkv batch num_heads sequence_length dim_head)
```


### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [x] New tests added to cover the changes.
- [x] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [x] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [x] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: NabJa <nabil.jabareen@gmail.com>
Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@marksgraham
Merge dev
98b38d8 
Signed-off-by: Mark Graham <markgraham539@gmail.com>
@marksgraham marksgraham changed the base branch from gen-ai-dev to dev May 9, 2024 07:30
@marksgraham marksgraham changed the base branch from dev to gen-ai-dev May 9, 2024 07:30
@marksgraham
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Merging in dev has created a big diff again. At least this PR has already been reviewed, so it shouldn't be too much of a problem for that.

I discussed with Eric and if needs be when the time comes to merge gen-ai-dev to dev we can create a new PR that only cherry picks the actual changes we have made on gen-ai-dev if we want to keep the commit history cleaner.

@marksgraham
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@KumoLiu is there anything else that needs doing before this can be merged? Once it is merged I can finish the last bits of the refactor..!

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KumoLiu commented May 10, 2024

/build

@KumoLiu KumoLiu enabled auto-merge (squash) May 10, 2024 06:43
@KumoLiu
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KumoLiu commented May 10, 2024

/build

@KumoLiu
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KumoLiu commented May 10, 2024

blossom ci failed in test_diffusion_model_unet:

[2024-05-10T07:22:05.391Z] ERROR: test_shape_with_different_in_channel_out_channel (tests.test_diffusion_model_unet.TestDiffusionModelUNet3D)
[2024-05-10T07:22:05.391Z] ----------------------------------------------------------------------
[2024-05-10T07:22:05.391Z] Traceback (most recent call last):
[2024-05-10T07:22:05.391Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/tests/test_diffusion_model_unet.py", line 518, in test_shape_with_different_in_channel_out_channel
[2024-05-10T07:22:05.391Z]     result = net.forward(torch.rand((1, in_channels, 16, 16, 16)), torch.randint(0, 1000, (1,)).long())
[2024-05-10T07:22:05.391Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/diffusion_model_unet.py", line 1672, in forward
[2024-05-10T07:22:05.391Z]     h = self.middle_block(hidden_states=h, temb=emb, context=context)
[2024-05-10T07:22:05.391Z]   File "/opt/conda/lib/python3.8/site-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T07:22:05.391Z]     return forward_call(*input, **kwargs)
[2024-05-10T07:22:05.391Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/diffusion_model_unet.py", line 793, in forward
[2024-05-10T07:22:05.391Z]     hidden_states = self.attention(hidden_states)
[2024-05-10T07:22:05.391Z]   File "/opt/conda/lib/python3.8/site-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T07:22:05.391Z]     return forward_call(*input, **kwargs)
[2024-05-10T07:22:05.391Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/blocks/spatialattention.py", line 76, in forward
[2024-05-10T07:22:05.391Z]     x = self.norm(x)
[2024-05-10T07:22:05.391Z]   File "/opt/conda/lib/python3.8/site-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T07:22:05.391Z]     return forward_call(*input, **kwargs)
[2024-05-10T07:22:05.391Z]   File "/opt/conda/lib/python3.8/site-packages/torch/nn/modules/normalization.py", line 268, in forward
[2024-05-10T07:22:05.391Z]     return F.group_norm(
[2024-05-10T07:22:05.391Z]   File "/opt/conda/lib/python3.8/site-packages/torch/nn/functional.py", line 2363, in group_norm
[2024-05-10T07:22:05.391Z]     return torch.group_norm(input, num_groups, weight, bias, eps, torch.backends.cudnn.enabled)
[2024-05-10T07:22:05.391Z] RuntimeError: Unsupported memory format. Supports only ChannelsLast, Contiguous

cc @marksgraham

@marksgraham
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@KumoLiu which pytorch version was this on?

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KumoLiu commented May 10, 2024

@KumoLiu which pytorch version was this on?

Pytorch version: 1.10.0a0+0aef44c in nvcr.io/nvidia/pytorch:21.10-py3

@marksgraham
Attempt to fix contigous issue
ae96458 
Signed-off-by: Mark Graham <markgraham539@gmail.com>
@marksgraham
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@KumoLiu i think i've fixed it. one of the outstanding issues on the refactor is to investigate why these .contiguous() calls are needed in DiffusionModelUNet and to see if they can be removed so I'll look into it more properly soon

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KumoLiu commented May 10, 2024

/build

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KumoLiu commented May 10, 2024

Still failed.

Error Log 

[2024-05-10T11:03:33.714Z] 
[2024-05-10T11:03:33.714Z] ======================================================================
[2024-05-10T11:03:33.714Z] ERROR: test_shape_unconditioned_models_0 (tests.test_spade_diffusion_model_unet.TestDiffusionModelUNet3D)
[2024-05-10T11:03:33.714Z] ----------------------------------------------------------------------
[2024-05-10T11:03:33.714Z] Traceback (most recent call last):
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/parameterized/parameterized.py", line 620, in standalone_func
[2024-05-10T11:03:33.714Z]     return func(*(a + p.args), **p.kwargs, **kw)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/tests/test_spade_diffusion_model_unet.py", line 519, in test_shape_unconditioned_models
[2024-05-10T11:03:33.714Z]     result = net.forward(
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 932, in forward
[2024-05-10T11:03:33.714Z]     h = upsample_block(hidden_states=h, res_hidden_states_list=res_samples, seg=seg, temb=emb, context=context)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 304, in forward
[2024-05-10T11:03:33.714Z]     hidden_states = resnet(hidden_states, temb, seg)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 169, in forward
[2024-05-10T11:03:33.714Z]     h = self.norm1(h, seg)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/blocks/spade_norm.py", line 88, in forward
[2024-05-10T11:03:33.714Z]     normalized = self.param_free_norm(x)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/container.py", line 141, in forward
[2024-05-10T11:03:33.714Z]     input = module(input)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/normalization.py", line 268, in forward
[2024-05-10T11:03:33.714Z]     return F.group_norm(
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/functional.py", line 2360, in group_norm
[2024-05-10T11:03:33.714Z]     return torch.group_norm(input, num_groups, weight, bias, eps, torch.backends.cudnn.enabled)
[2024-05-10T11:03:33.714Z] RuntimeError: Unsupported memory format. Supports only ChannelsLast, Contiguous
[2024-05-10T11:03:33.714Z] 
[2024-05-10T11:03:33.714Z] ======================================================================
[2024-05-10T11:03:33.714Z] ERROR: test_shape_unconditioned_models_1 (tests.test_spade_diffusion_model_unet.TestDiffusionModelUNet3D)
[2024-05-10T11:03:33.714Z] ----------------------------------------------------------------------
[2024-05-10T11:03:33.714Z] Traceback (most recent call last):
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/parameterized/parameterized.py", line 620, in standalone_func
[2024-05-10T11:03:33.714Z]     return func(*(a + p.args), **p.kwargs, **kw)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/tests/test_spade_diffusion_model_unet.py", line 519, in test_shape_unconditioned_models
[2024-05-10T11:03:33.714Z]     result = net.forward(
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 932, in forward
[2024-05-10T11:03:33.714Z]     h = upsample_block(hidden_states=h, res_hidden_states_list=res_samples, seg=seg, temb=emb, context=context)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 304, in forward
[2024-05-10T11:03:33.714Z]     hidden_states = resnet(hidden_states, temb, seg)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 169, in forward
[2024-05-10T11:03:33.714Z]     h = self.norm1(h, seg)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/blocks/spade_norm.py", line 88, in forward
[2024-05-10T11:03:33.714Z]     normalized = self.param_free_norm(x)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/container.py", line 141, in forward
[2024-05-10T11:03:33.714Z]     input = module(input)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/normalization.py", line 268, in forward
[2024-05-10T11:03:33.714Z]     return F.group_norm(
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/functional.py", line 2360, in group_norm
[2024-05-10T11:03:33.714Z]     return torch.group_norm(input, num_groups, weight, bias, eps, torch.backends.cudnn.enabled)
[2024-05-10T11:03:33.714Z] RuntimeError: Unsupported memory format. Supports only ChannelsLast, Contiguous
[2024-05-10T11:03:33.714Z] 
[2024-05-10T11:03:33.714Z] ======================================================================
[2024-05-10T11:03:33.714Z] ERROR: test_shape_unconditioned_models_2 (tests.test_spade_diffusion_model_unet.TestDiffusionModelUNet3D)
[2024-05-10T11:03:33.714Z] ----------------------------------------------------------------------
[2024-05-10T11:03:33.714Z] Traceback (most recent call last):
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/parameterized/parameterized.py", line 620, in standalone_func
[2024-05-10T11:03:33.714Z]     return func(*(a + p.args), **p.kwargs, **kw)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/tests/test_spade_diffusion_model_unet.py", line 519, in test_shape_unconditioned_models
[2024-05-10T11:03:33.714Z]     result = net.forward(
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 932, in forward
[2024-05-10T11:03:33.714Z]     h = upsample_block(hidden_states=h, res_hidden_states_list=res_samples, seg=seg, temb=emb, context=context)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 304, in forward
[2024-05-10T11:03:33.714Z]     hidden_states = resnet(hidden_states, temb, seg)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 169, in forward
[2024-05-10T11:03:33.714Z]     h = self.norm1(h, seg)
[2024-05-10T11:03:33.714Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.714Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.714Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/blocks/spade_norm.py", line 88, in forward
[2024-05-10T11:03:33.715Z]     normalized = self.param_free_norm(x)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/container.py", line 141, in forward
[2024-05-10T11:03:33.715Z]     input = module(input)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/normalization.py", line 268, in forward
[2024-05-10T11:03:33.715Z]     return F.group_norm(
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/functional.py", line 2360, in group_norm
[2024-05-10T11:03:33.715Z]     return torch.group_norm(input, num_groups, weight, bias, eps, torch.backends.cudnn.enabled)
[2024-05-10T11:03:33.715Z] RuntimeError: Unsupported memory format. Supports only ChannelsLast, Contiguous
[2024-05-10T11:03:33.715Z] 
[2024-05-10T11:03:33.715Z] ======================================================================
[2024-05-10T11:03:33.715Z] ERROR: test_shape_unconditioned_models_3 (tests.test_spade_diffusion_model_unet.TestDiffusionModelUNet3D)
[2024-05-10T11:03:33.715Z] ----------------------------------------------------------------------
[2024-05-10T11:03:33.715Z] Traceback (most recent call last):
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/parameterized/parameterized.py", line 620, in standalone_func
[2024-05-10T11:03:33.715Z]     return func(*(a + p.args), **p.kwargs, **kw)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/tests/test_spade_diffusion_model_unet.py", line 519, in test_shape_unconditioned_models
[2024-05-10T11:03:33.715Z]     result = net.forward(
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 922, in forward
[2024-05-10T11:03:33.715Z]     h = self.middle_block(hidden_states=h, temb=emb, context=context)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/diffusion_model_unet.py", line 793, in forward
[2024-05-10T11:03:33.715Z]     hidden_states = self.attention(hidden_states)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/blocks/spatialattention.py", line 76, in forward
[2024-05-10T11:03:33.715Z]     x = self.norm(x)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/normalization.py", line 268, in forward
[2024-05-10T11:03:33.715Z]     return F.group_norm(
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/functional.py", line 2360, in group_norm
[2024-05-10T11:03:33.715Z]     return torch.group_norm(input, num_groups, weight, bias, eps, torch.backends.cudnn.enabled)
[2024-05-10T11:03:33.715Z] RuntimeError: Unsupported memory format. Supports only ChannelsLast, Contiguous
[2024-05-10T11:03:33.715Z] 
[2024-05-10T11:03:33.715Z] ======================================================================
[2024-05-10T11:03:33.715Z] ERROR: test_shape_unconditioned_models_4 (tests.test_spade_diffusion_model_unet.TestDiffusionModelUNet3D)
[2024-05-10T11:03:33.715Z] ----------------------------------------------------------------------
[2024-05-10T11:03:33.715Z] Traceback (most recent call last):
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/parameterized/parameterized.py", line 620, in standalone_func
[2024-05-10T11:03:33.715Z]     return func(*(a + p.args), **p.kwargs, **kw)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/tests/test_spade_diffusion_model_unet.py", line 519, in test_shape_unconditioned_models
[2024-05-10T11:03:33.715Z]     result = net.forward(
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 922, in forward
[2024-05-10T11:03:33.715Z]     h = self.middle_block(hidden_states=h, temb=emb, context=context)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/diffusion_model_unet.py", line 793, in forward
[2024-05-10T11:03:33.715Z]     hidden_states = self.attention(hidden_states)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/blocks/spatialattention.py", line 76, in forward
[2024-05-10T11:03:33.715Z]     x = self.norm(x)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/normalization.py", line 268, in forward
[2024-05-10T11:03:33.715Z]     return F.group_norm(
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/functional.py", line 2360, in group_norm
[2024-05-10T11:03:33.715Z]     return torch.group_norm(input, num_groups, weight, bias, eps, torch.backends.cudnn.enabled)
[2024-05-10T11:03:33.715Z] RuntimeError: Unsupported memory format. Supports only ChannelsLast, Contiguous
[2024-05-10T11:03:33.715Z] 
[2024-05-10T11:03:33.715Z] ======================================================================
[2024-05-10T11:03:33.715Z] ERROR: test_shape_unconditioned_models_5 (tests.test_spade_diffusion_model_unet.TestDiffusionModelUNet3D)
[2024-05-10T11:03:33.715Z] ----------------------------------------------------------------------
[2024-05-10T11:03:33.715Z] Traceback (most recent call last):
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/parameterized/parameterized.py", line 620, in standalone_func
[2024-05-10T11:03:33.715Z]     return func(*(a + p.args), **p.kwargs, **kw)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/tests/test_spade_diffusion_model_unet.py", line 519, in test_shape_unconditioned_models
[2024-05-10T11:03:33.715Z]     result = net.forward(
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 922, in forward
[2024-05-10T11:03:33.715Z]     h = self.middle_block(hidden_states=h, temb=emb, context=context)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/diffusion_model_unet.py", line 793, in forward
[2024-05-10T11:03:33.715Z]     hidden_states = self.attention(hidden_states)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/blocks/spatialattention.py", line 76, in forward
[2024-05-10T11:03:33.715Z]     x = self.norm(x)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/normalization.py", line 268, in forward
[2024-05-10T11:03:33.715Z]     return F.group_norm(
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/functional.py", line 2360, in group_norm
[2024-05-10T11:03:33.715Z]     return torch.group_norm(input, num_groups, weight, bias, eps, torch.backends.cudnn.enabled)
[2024-05-10T11:03:33.715Z] RuntimeError: Unsupported memory format. Supports only ChannelsLast, Contiguous
[2024-05-10T11:03:33.715Z] 
[2024-05-10T11:03:33.715Z] ======================================================================
[2024-05-10T11:03:33.715Z] ERROR: test_shape_unconditioned_models_6 (tests.test_spade_diffusion_model_unet.TestDiffusionModelUNet3D)
[2024-05-10T11:03:33.715Z] ----------------------------------------------------------------------
[2024-05-10T11:03:33.715Z] Traceback (most recent call last):
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/parameterized/parameterized.py", line 620, in standalone_func
[2024-05-10T11:03:33.715Z]     return func(*(a + p.args), **p.kwargs, **kw)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/tests/test_spade_diffusion_model_unet.py", line 519, in test_shape_unconditioned_models
[2024-05-10T11:03:33.715Z]     result = net.forward(
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 922, in forward
[2024-05-10T11:03:33.715Z]     h = self.middle_block(hidden_states=h, temb=emb, context=context)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/diffusion_model_unet.py", line 793, in forward
[2024-05-10T11:03:33.715Z]     hidden_states = self.attention(hidden_states)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/blocks/spatialattention.py", line 76, in forward
[2024-05-10T11:03:33.715Z]     x = self.norm(x)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.715Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/normalization.py", line 268, in forward
[2024-05-10T11:03:33.715Z]     return F.group_norm(
[2024-05-10T11:03:33.715Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/functional.py", line 2360, in group_norm
[2024-05-10T11:03:33.715Z]     return torch.group_norm(input, num_groups, weight, bias, eps, torch.backends.cudnn.enabled)
[2024-05-10T11:03:33.715Z] RuntimeError: Unsupported memory format. Supports only ChannelsLast, Contiguous
[2024-05-10T11:03:33.715Z] 
[2024-05-10T11:03:33.715Z] ======================================================================
[2024-05-10T11:03:33.715Z] ERROR: test_shape_with_different_in_channel_out_channel (tests.test_spade_diffusion_model_unet.TestDiffusionModelUNet3D)
[2024-05-10T11:03:33.715Z] ----------------------------------------------------------------------
[2024-05-10T11:03:33.971Z] 
[2024-05-10T11:03:33.971Z] 
[2024-05-10T11:03:33.971Z] tests finished, printing completed times >10.0s in ascending order...
[2024-05-10T11:03:33.971Z] 
[2024-05-10T11:03:33.971Z] test_start (tests.test_loader_semaphore.TestImportLock) (11.9s)
[2024-05-10T11:03:33.971Z] test_visible_devices (tests.test_set_visible_devices.TestVisibleDevices) (12.0s)
[2024-05-10T11:03:33.971Z] test_pdb (tests.test_config_parser.TestConfigParser) (12.1s)
[2024-05-10T11:03:33.971Z] test_verify_fp16_0__home_jenkins_agent_workspace_MONAI_premerge_monai_tests_testing_data_metadata_json (tests.test_bundle_verify_net.TestVerifyNetwork) (12.9s)
[2024-05-10T11:03:33.971Z] test_densenet_shape_03 (tests.test_densenet.TestDENSENET) (13.4s)
[2024-05-10T11:03:33.971Z] test_script (tests.test_highresnet.TestHighResNet) (15.6s)
[2024-05-10T11:03:33.971Z] test_invert (tests.test_invertd.TestInvertd) (16.0s)
[2024-05-10T11:03:33.971Z] test_cpu_precise_backwards_5_3_dimensions_1_channel_high_spatial_sigmas_high_color_sigma (tests.test_trainable_bilateral.BilateralFilterTestCaseCpuPrecise) (16.0s)
[2024-05-10T11:03:33.971Z] test_lr_finder (tests.test_lr_finder.TestLRFinder) (28.2s)
[2024-05-10T11:03:33.971Z] test discovery time: 15.0s
[2024-05-10T11:03:33.971Z] total testing time: 1.38e+02s
[2024-05-10T11:03:33.971Z] Remember to check above times for any errors!
[2024-05-10T11:03:33.971Z] Traceback (most recent call last):
[2024-05-10T11:03:33.971Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/tests/test_spade_diffusion_model_unet.py", line 541, in test_shape_with_different_in_channel_out_channel
[2024-05-10T11:03:33.971Z]     result = net.forward(
[2024-05-10T11:03:33.971Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/spade_diffusion_model_unet.py", line 922, in forward
[2024-05-10T11:03:33.971Z]     h = self.middle_block(hidden_states=h, temb=emb, context=context)
[2024-05-10T11:03:33.971Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.971Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.971Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/nets/diffusion_model_unet.py", line 793, in forward
[2024-05-10T11:03:33.971Z]     hidden_states = self.attention(hidden_states)
[2024-05-10T11:03:33.971Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.971Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.971Z]   File "/home/jenkins/agent/workspace/MONAI-premerge/monai/monai/networks/blocks/spatialattention.py", line 76, in forward
[2024-05-10T11:03:33.971Z]     x = self.norm(x)
[2024-05-10T11:03:33.971Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/module.py", line 1102, in _call_impl
[2024-05-10T11:03:33.971Z]     return forward_call(*input, **kwargs)
[2024-05-10T11:03:33.971Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/modules/normalization.py", line 268, in forward
[2024-05-10T11:03:33.971Z]     return F.group_norm(
[2024-05-10T11:03:33.971Z]   File "/usr/local/lib/python3.8/dist-packages/torch/nn/functional.py", line 2360, in group_norm
[2024-05-10T11:03:33.971Z]     return torch.group_norm(input, num_groups, weight, bias, eps, torch.backends.cudnn.enabled)
[2024-05-10T11:03:33.971Z] RuntimeError: Unsupported memory format. Supports only ChannelsLast, Contiguous

@marksgraham
Attempt to fix contigous issue
defe4df 
Signed-off-by: Mark Graham <markgraham539@gmail.com>
@marksgraham
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sorry i didn't think about the spade version. 🤞 🤞 this time

@KumoLiu
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KumoLiu commented May 10, 2024

/build

@marksgraham
Remove tests added unintentionally
f0c59aa 
Signed-off-by: Mark Graham <markgraham539@gmail.com>
@KumoLiu
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KumoLiu commented May 10, 2024

/build

@KumoLiu KumoLiu merged commit 1a57b55 into Project-MONAI:gen-ai-dev May 10, 2024
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@KumoLiu KumoLiu mentioned this pull request Jul 23, 2024
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@KumoLiu KumoLiu KumoLiu approved these changes

@ericspod ericspod ericspod approved these changes

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