MONAI Label 0.8.0

Added

• OHIF V3

  • DeepEdit and Segmentation Models are supported
  • Deepgrow and Scribbles yet to be supported
    

• Option to download DICOM Seg in Inference API

Changed

• MONAI Core dependency updated to >= 0.13.0
• Bug Fixes related to DeepEdit model
• Documentation Fixes

Removed

• OHIF V2 will be deprecated

MONAI Label 0.7.0

Added

• Multi Users authentication and KeyCloak Integration

  • MONAI Label APIs with Keycloak integration for user authentication and role based access.
  • Login support for 3D Slicer via MONAILabel + KeyClock.

• Whole Body CT segmentation

  • Segmenting 104 anatomies in 4 seconds!

• MONAI Bundle Support Improvements

  • Support visualization of bundle config option.
  • Enhancement of monai-zoo access.
  • Support bundle downloading from NGC.
  • Enhacement of multi-gpu training of bundles.

• New MONAI Label Tutorial Series

  • Quickstart tutorials and installation instructions in notebooks.

• Documentation enhancements

Changed

• Updated pretrained models:

  • segmentation
  • deepedit

• CI/CD and tests

  • blossom CI/CD and pre-merge pipeline enabled.
  • Increased Unit tests coverage to 80%.

Removed

MONAI Label 0.6.0

Added

• Pathology Models
  • NuClick annotation model
  • Nuclei classification model
  • HoverNet model
• QuPath Extension: 0.3.1 | Demo
  • User experience enhancements
  • MONAI Label specific Toolbar actions
  • Drag and Drop ROI to run auto-segmentation models
  • Single click to run interaction models (NuClick)
  • Support Next Sample/ROI for Active Learning
• Experiment Management
• 3D Slicer: Detection model support in MONAI Bundle App for Radiology use-case
• Multi-GPU/Multi-Threaded support for Batch Inference

Changed

• Support latest version of bundles in MONAI Bundle App
• Upgrade vertebra pipeline
• MONAI version >= 1.1.0

Removed

• DeepEdit model for Nuclei segmentation in Pathology

Pretrained Model Weights

THIS IS NOT A RELEASE PAGE

Download Pretrained model weights (TEST/DEMO purpose only) for the sample apps from here

MONAI Label 0.5.2

Added

• Bundle support (Endoscopy Sample App)
  • Tool Tracking segmentation model
  • InBody vs OutBody classification model
• Rest APIs to download latest trained model and stats
• Interactive NuClick segmentation in DSA | Demo
• Support for MONAI 1.0.1

Changed

• Option to disable DICOM to NIFTI conversion for OHIF usecase
• Proxy URL fixes for GCP + DICOMWeb support
• 3D Slicer UI Improvements
  • Optimize window size for options/config
  • Fix download label feature to fetch original labels
• Fixes for multi label output of segmentation_nuclei model (Pathology)
• Improvements on MONAI Bundle App
  • support local bundles (pre-downloaded)
  • support customized scripts

Removed

• Remove option to run ALL Training Tasks in 3D Slicer (Deprecated)

MONAI Label 0.5.1

Added

• Endoscopy Sample App
  • Tool Tracking segmentation model | Demo
  • InBody vs OutBody classification model | Demo
  • DeepEdit interaction model
  • CVAT Integration to support automated workflow to run Active Learning Iterations
• Multi Stage vertebra segmentation in Radiology App

Changed

• Improving performance for Radiology App
  • Support cache for pre-transforms in case repeated inference for interaction models
  • Support cache for DICOM Web API responses
  • Optimize pre transforms to run GPU for max throughput
  • Fix DICOM Proxy for wado/qido
• Improvements for Epistemic (v2) active learning strategy
• Support for MONAI 1.0.0 and above
• Fixes Scribbles to support MetaTensor

Removed

• TTA Based active learning strategy is deprecated

MONAI Label 0.4.2

Added

• MONAI Bundle App - Pull compatible bundles from MONAI Zoo
  • spleen_ct_segmentation
  • spleen_deepedit_annotation
  • others

Changed

• Support for MONAI 0.9.1

MONAI Label 0.4.1

Changed

• Fix MONAI dependency version to 0.9.0

MONAI Label 0.4.0

Added

• Pathology Sample App
  • DeepEdit, Segmentation, NuClick models
  • Digital Slide Archive plugin | Demo
  • QuPath plugin | Demo
• Histogram-based GraphCut and Gaussian Mixture Model (GMM) based methods for scribbles

Changed

• Support for MONAI (supports 0.9.0 and above)
• Radiology Sample App (Aggregation of previous radiology models)
  • DeepEdit, Deepgrow, Segmentation, SegmentationSpleen models
• NrrdWriter for multi-channel arrays
• 3D Slicer Fixes
  • Support Segmentation Editor and other UI enhancements
  • Improvements for Scribble Interactions
  • Support for .seg.nrrd segmentation files
  • Support to pre-load existing label masks during image fetch/load
• Static checks using pre-commit ci

Removed

• SimpleCRF and dependent functions for scribbles

MONAI Label 0.3.2

Added

• SSL and multiple worker options while starting MONAI Label server
• Scribbles support for OHIF Viewer
• Add Citation page

Changed

• Support for MONAI (supports 0.8.1 and above)
• Fix loading pretrained models for TTA and Epistemic Scoring
• Fix Load MMAR API for deepgrow/segmentation apps
• Upgrade PIP Dependencies
• Documentation Fixes