Merge pull request #274 from Proteobench/fix_fragpipe_documentation #27

	name: Automated Release

	on:
	push:
	tags:
	- 'v*'

	jobs:
	build-and-release:
	runs-on: ubuntu-latest
	permissions: write-all
	steps:
	- name: Check out code
	uses: actions/checkout@v2

	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: '3.11'

	- name: Install build tools
	run: \|
	python -m pip install --upgrade pip
	pip install build

	- name: Build wheel
	run: \|
	python -m build --wheel

	- name: Upload wheel to artifacts
	uses: actions/upload-artifact@v2
	with:
	name: dist
	path: dist/*.whl

	- name: Create GitHub Release
	uses: docker://antonyurchenko/git-release:v4
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	DRAFT_RELEASE: "false"
	PRE_RELEASE: "false"
	CHANGELOG_FILE: "CHANGELOG.md"
	with:
	args: \|
	dist/*.whl

	publish:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: '3.10'

	- name: Install Flit
	run: python -m pip install flit

	- name: Publish to PyPI
	env:
	FLIT_USERNAME: __token__
	FLIT_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
	run: flit publish --repository pypi

	update-server:
	name: Update ProteoBench on server
	needs: [build-and-release, publish]
	runs-on: ubuntu-latest
	steps:
	- name: executing update script on server
	uses: appleboy/ssh-action@v1.0.3
	with:
	host: ${{ secrets.SERVER_IP }}
	username: ${{ secrets.SERVER_USERNAME }}
	key: ${{ secrets.SERVER_KEY }}
	script_stop: true
	script: \|
	sudo ~/callupdate.sh

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