GitHub - ProzacR/PDB-ligand-extractor: simple Perl scripts to do work with pdb files (pdb.org). PDB parser read

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simple Perl scripts to do work with pdb files (pdb.org). PDB parser read_pdb.pl may be the most interesting.

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Name		Name	Last commit message	Last commit date
Latest commit History 36 Commits
README		README
VR_sasa.pl		VR_sasa.pl
get_Kd.pl		get_Kd.pl
isimti_ligandus.pl		isimti_ligandus.pl
methane.pdb		methane.pdb
perl_ogl.pl		perl_ogl.pl
read_pdb.pl		read_pdb.pl

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# VR
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VR_sasa.pl - input pdb output SASA using Shrake-Rupley algorithm.

isimti_ligandus.pl - input pdb output pdb of ligands excluding some in list.

methane.pdb - example pdb file.

read_pdb.pl - simple pdb file parser. Puts all data in $atom[number]{'property'} for futher calculations.