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Hi there,
There has been changes in BSgenome library. getREF function no longer works even if genomes are indeed available.
getREF
The issue comes from this line :
BSgenome::installed.genomes(splitNameParts=TRUE)$provider_version
That should now be :
BSgenome::installed.genomes(splitNameParts=TRUE)$genome
Best
The text was updated successfully, but these errors were encountered:
I keep getting the same error with the latest version. It would be nice to have this line fixed with the suggestion. line 93 of helper_functions.R
helper_functions.R
GENOMES <- BSgenome::installed.genomes( splitNameParts=TRUE)$provider_version
thanks
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Hi there,
There has been changes in BSgenome library.
getREF
function no longer works even if genomes are indeed available.The issue comes from this line :
BSgenome::installed.genomes(splitNameParts=TRUE)$provider_version
That should now be :
BSgenome::installed.genomes(splitNameParts=TRUE)$genome
Best
The text was updated successfully, but these errors were encountered: