Popular repositories
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pubmlst_client Public
List and download schemes from pubMLST.org and other BIGSDB servers
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galaxy-tool-tutorials Public
Galaxy tool training materials being developed for in-house workshops.
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blast_reporting Public
A Galaxy tool that converts an NCBI BLAST XML format search result into 12, 24, 26 or custom column tabular and HTML reports.
Repositories
- irida-plugin-species-abundance Public
Estimate the relative abundance of sequence reads originating from different species in a sample using the IRIDA system
- irida-plugin-tbprofiler Public
- galaxy_tools Public
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- compute_canada_cloud Public
- snakemake_demo Public
- decision-tree Public
A question and answer web form system for exploring the research questions and datasets pertinent to an emerging infectious disease outbreak.
- irida-plugin-snippy-single Public
Call SNPs and indels between a reference genome and your sequence data
- irida-plugin-snippy-phylogenomics Public
Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.
- COVID19-QC Public