drep.rst

Drep

Introduction ~~~~~~~~ Drep is a python program for rapidly comparing large numbers of genomes.

For more information, please check its website: https://biocontainers.pro/tools/drep and its home page on Github.

Versions

• 3.2.2

Commands ~~~~~~~ - dRep

Module

You can load the modules by:

module load biocontainers
module load drep

Example job ~~~~~ .. warning:: Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Drep on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name 
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=drep
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers drep

dRep compare compare_out -g tests/genomes/*
dRep dereplicate dereplicate_out -g tests/genomes/*