Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

SRA and Genbank uploads for all sequence data #47

Open
hputnam opened this issue Sep 15, 2022 · 9 comments
Open

SRA and Genbank uploads for all sequence data #47

hputnam opened this issue Sep 15, 2022 · 9 comments
Assignees
@AHuffmyer @daniellembecker @zdellaert @JillAshey @PierrickHarnay @flofields

Comments

@hputnam
Copy link
Contributor

hputnam commented Sep 15, 2022

No description provided.

@hputnam
Copy link
Contributor Author

hputnam commented Sep 15, 2022

https://docs.google.com/spreadsheets/d/1qDGGpLFcmoO-fIFOPSUhPcxi4ErXIq2PkQbxvCCzI40/edit#gid=0

@hputnam
Copy link
Contributor Author

hputnam commented Sep 15, 2022

https://github.com/Putnam-Lab/Lab_Management/tree/master/Bioinformatics_%26_Coding/Data_Mangament

@AHuffmyer
Copy link
Contributor

Confirmed Mcap2020 ITS2, 16S, and TagSeq sequences uploaded to SRA with metadata added to our lab sequencing inventory. Project PRJNA900235

@AHuffmyer
Copy link
Contributor

We need to revisit this spreadsheet at a lab meeting to go over the format of metadata and update all projects. https://docs.google.com/spreadsheets/d/1qDGGpLFcmoO-fIFOPSUhPcxi4ErXIq2PkQbxvCCzI40/edit#gid=0

@hputnam
Copy link
Contributor Author

hputnam commented Apr 23, 2024

please confirm here in a comment that every sequencing dataset you worked with is listed on this file: https://docs.google.com/spreadsheets/d/1qDGGpLFcmoO-fIFOPSUhPcxi4ErXIq2PkQbxvCCzI40/edit#gid=0

@daniellembecker
@flofields
@zdellaert
@JillAshey
@AHuffmyer
@PierrickHarnay
@hputnam

@AHuffmyer
Copy link
Contributor

AHuffmyer commented Apr 23, 2024 •
edited
Loading

Confirmed all my sequencing data that is in hand is accounted for on this sheet. Are E5 timeseries deep dive sequencing projects documented elsewhere?

@zdellaert
Copy link
Collaborator

Confirmed Pdam Heron Island pCO2

@daniellembecker
Copy link
Collaborator

daniellembecker commented May 1, 2024 •
edited
Loading

Confirmed 20231214_Apulchra_RiboDepletion: PRJNA1099265 (Becker)

@AHuffmyer
Copy link
Contributor

Confirmed all files are updated with Andromeda backup location

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@AHuffmyer AHuffmyer

@daniellembecker daniellembecker

@zdellaert zdellaert

@JillAshey JillAshey

@PierrickHarnay PierrickHarnay

@flofields flofields

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests