Fixed mock_snakemake for snakemake v.8.14: All snakemake settings moved #2994

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Job	Run time
build (ubuntu-latest, stable)	10m 16s
build (ubuntu-latest, master)	9m 12s
build (macos-latest, stable)	8m 1s
build (windows-latest, stable)	20m 48s
	48m 17s