Snakefile: Comment out group settings

They are still experimental and lead to difficult to understand bugs.
For now we are advising to use submit the whole model generation up until the
prepare_network step on one compute node, i.e. submit a job running

snakemake --until prepare_network --resources mem=60000 -j4

for a 64GB compute node.

And only run the solve_network rule in parallel on the cluster.

Snakefile

@@ -24,7 +24,7 @@ if config['enable']['prepare_links_p_nom']:
         output: 'data/links_p_nom.csv'
         threads: 1
         resources: mem=500
-        group: 'nonfeedin_preparation'
+        # group: 'nonfeedin_preparation'
         script: 'scripts/prepare_links_p_nom.py'
 
 if config['enable']['powerplantmatching']:
@@ -33,7 +33,7 @@ if config['enable']['powerplantmatching']:
         output: "resources/powerplants.csv"
         threads: 1
         resources: mem=500
-        group: 'nonfeedin_preparation'
+        # group: 'nonfeedin_preparation'
         script: "scripts/build_powerplants.py"
 
 rule base_network:
@@ -53,7 +53,7 @@ rule base_network:
     benchmark: "benchmarks/base_network"
     threads: 1
     resources: mem=500
-    group: 'nonfeedin_preparation'
+    # group: 'nonfeedin_preparation'
     script: "scripts/base_network.py"
 
 rule build_shapes:
@@ -72,7 +72,7 @@ rule build_shapes:
         nuts3_shapes='resources/nuts3_shapes.geojson'
     threads: 1
     resources: mem=500
-    group: 'nonfeedin_preparation'
+    # group: 'nonfeedin_preparation'
     script: "scripts/build_shapes.py"
 
 rule build_bus_regions:
@@ -84,15 +84,15 @@ rule build_bus_regions:
         regions_onshore="resources/regions_onshore.geojson",
         regions_offshore="resources/regions_offshore.geojson"
     resources: mem=1000
-    group: 'nonfeedin_preparation'
+    # group: 'nonfeedin_preparation'
     script: "scripts/build_bus_regions.py"
 
 rule build_cutout:
     output: "cutouts/{cutout}"
     resources: mem=5000
     threads: config['atlite'].get('nprocesses', 4)
     benchmark: "benchmarks/build_cutout_{cutout}"
-    group: 'feedin_preparation'
+    # group: 'feedin_preparation'
     script: "scripts/build_cutout.py"
 
 def memory_build_renewable_potentials(wildcards):
@@ -107,7 +107,7 @@ rule build_renewable_potentials:
     output: "resources/potentials_{technology}.nc"
     resources: mem=memory_build_renewable_potentials
     benchmark: "benchmarks/build_renewable_potentials_{technology}"
-    group: 'feedin_preparation'
+    # group: 'feedin_preparation'
     script: "scripts/build_renewable_potentials.py"
 
 rule build_renewable_profiles:
@@ -122,7 +122,7 @@ rule build_renewable_profiles:
         profile="resources/profile_{technology}.nc",
     resources: mem=5000
     benchmark: "benchmarks/build_renewable_profiles_{technology}"
-    group: 'feedin_preparation'
+    # group: 'feedin_preparation'
     script: "scripts/build_renewable_profiles.py"
 
 rule build_hydro_profile:
@@ -132,7 +132,7 @@ rule build_hydro_profile:
         cutout="cutouts/" + config["renewable"]['hydro']['cutout']
     output: 'resources/profile_hydro.nc'
     resources: mem=5000
-    group: 'feedin_preparation'
+    # group: 'feedin_preparation'
     script: 'scripts/build_hydro_profile.py'
 
 rule add_electricity:
@@ -150,7 +150,7 @@ rule add_electricity:
     benchmark: "benchmarks/add_electricity"
     threads: 1
     resources: mem=3000
-    group: 'build_pypsa_networks'
+    # group: 'build_pypsa_networks'
     script: "scripts/add_electricity.py"
 
 rule simplify_network:
@@ -166,7 +166,7 @@ rule simplify_network:
     benchmark: "benchmarks/simplify_network/{network}_s{simpl}"
     threads: 1
     resources: mem=4000
-    group: 'build_pypsa_networks'
+    # group: 'build_pypsa_networks'
     script: "scripts/simplify_network.py"
 
 rule cluster_network:
@@ -183,7 +183,7 @@ rule cluster_network:
     benchmark: "benchmarks/cluster_network/{network}_s{simpl}_{clusters}"
     threads: 1
     resources: mem=3000
-    group: 'build_pypsa_networks'
+    # group: 'build_pypsa_networks'
     script: "scripts/cluster_network.py"
 
 # rule add_sectors:
@@ -201,7 +201,7 @@ rule prepare_network:
     output: 'networks/{network}_s{simpl}_{clusters}_lv{lv}_{opts}.nc'
     threads: 1
     resources: mem=1000
-    benchmark: "benchmarks/prepare_network/{network}_s{simpl}_{clusters}_lv{lv}_{opts}"
+    # benchmark: "benchmarks/prepare_network/{network}_s{simpl}_{clusters}_lv{lv}_{opts}"
     script: "scripts/prepare_network.py"
 
 def memory(w):
@@ -244,7 +244,7 @@ rule solve_operations_network:
     benchmark: "benchmarks/solve_operations_network/{network}_s{simpl}_{clusters}_lv{lv}_{opts}"
     threads: 4
     resources: mem=(lambda w: 5000 + 372 * int(w.clusters))
-    group: "solve_operations"
+    # group: "solve_operations"
     script: "scripts/solve_operations_network.py"
 
 rule plot_network: