Make data retrieval rules use their own minimal conda env #888
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This means that the main conda environment can be changed for development purposes without necessitating the re-running of data retrieval due to software environment change by default.
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I usually use the default snakemake options for when to re-run rules; including when the software environment changes. This means, however, that even data-retrieval rules would re-run when changing some dependency version in
environment.yaml. Such re-runs have become especially painful now that the output files from these data retrieval rules are being marked as protected: this prevents the rule from re-running, and I have tosudo rm -rfthe databundles! Not great.The present PR just creates a separate, minimal conda env for the retrieval rules. Just a quality-of-life improvement.
(And it seems some snakefmt fixed have sneaked their way in.)
Checklist
envs/environment.yaml.config.default.yaml.doc/configtables/*.csv.doc/release_notes.rstis added.