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Additional documentation for cwt (issue #676) #129

Additional documentation for cwt (issue #676)

Additional documentation for cwt (issue #676) #129

Workflow file for this run

name: Test
on:
push:
branches:
- master
- v1.**
pull_request:
branches:
- master
- v1.**
jobs:
test_pywavelets_linux:
name: linux-cp${{ matrix.python-version }}-${{ matrix.OPTIONS_NAME }}
runs-on: ubuntu-latest
env:
MPLBACKEND: Agg
CYTHON_TRACE: 1
CYTHONSPEC: cython
NUMPY_MIN: numpy==1.20.3
CYTHON_MIN: cython==0.29.18
SCIPY_MIN: scipy==1.2.3
strategy:
# Ensure that a wheel builder finishes even if another fails
fail-fast: false
matrix:
python-version: [3.8, 3.9, '3.10', '3.11']
MINIMUM_REQUIREMENTS: [0]
USE_SCIPY: [0]
USE_SDIST: [0]
USE_WHEEL: [0]
REFGUIDE_CHECK: [0]
PIP_FLAGS: [""]
OPTIONS_NAME: ["default"]
include:
- platform_id: manylinux_x86_64
python-version: 3.8
MINIMUM_REQUIREMENTS: 1
OPTIONS_NAME: "minimum-req"
- platform_id: manylinux_x86_64
python-version: 3.8
USE_SCIPY: 1
OPTIONS_NAME: "with-scipy"
- platform_id: manylinux_x86_64
python-version: 3.8
USE_SDIST: 1
OPTIONS_NAME: "install-from-sdist"
- platform_id: manylinux_x86_64
python-version: 3.8
USE_WHEEL: 1
OPTIONS_NAME: "install-from-wheel"
- platform_id: manylinux_x86_64
python-version: '3.11'
PIP_FLAGS: "--pre"
OPTIONS_NAME: "pre-releases"
steps:
- name: Checkout PyWavelets
uses: actions/checkout@v3
- name: Setup Python
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version}}
- name: Build package
env:
VERSION: ${{ matrix.python-version }}
MINIMUM_REQUIREMENTS: ${{ matrix.MINIMUM_REQUIREMENTS }}
PIP_FLAGS: ${{ matrix.PIP_FLAGS }}
USE_WHEEL: ${{ matrix.USE_WHEEL }}
USE_SDIST: ${{ matrix.USE_SDIST }}
USE_SCIPY: ${{ matrix.USE_SCIPY }}
REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }}
run: |
uname -a
df -h
ulimit -a
# ccache -s
which python
python --version
# sudo apt-get install libatlas-base-dev
pip install --upgrade pip build
# Set numpy version first, other packages link against it
if [ "${MINIMUM_REQUIREMENTS}" == "1" ]; then
pip install ${CYTHON_MIN}
pip install ${NUMPY_MIN}
if [ "${USE_SCIPY}" == "1" ]; then pip install ${SCIPY_MIN}; fi
else
pip install cython
pip install numpy
if [ "${USE_SCIPY}" == "1" ]; then pip install scipy; fi
fi
pip install matplotlib pytest
set -o pipefail
if [ "${USE_WHEEL}" == "1" ]; then
# Need verbose output or TravisCI will terminate after 10 minutes
pip wheel . -v
pip install pywavelets*.whl
elif [ "${USE_SDIST}" == "1" ]; then
python -m build --sdist
pip install dist/pyw*.tar.gz -v
elif [ "${REFGUIDE_CHECK}" == "1" ]; then
pip install sphinx numpydoc
pip install . -v
else
pip install . -v
fi
- name: Run tests
env:
PIP_FLAGS: ${{ matrix.PIP_FLAGS }}
USE_WHEEL: ${{ matrix.USE_WHEEL }}
USE_SDIST: ${{ matrix.USE_SDIST }}
REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }}
run: |
set -o pipefail
# Move out of source directory to avoid finding local pywt
pushd demo
if [ "${USE_WHEEL}" == "1" ]; then
pytest --pyargs pywt
python ../pywt/tests/test_doc.py
elif [ "${USE_SDIST}" == "1" ]; then
pytest --pyargs pywt
python ../pywt/tests/test_doc.py
elif [ "${REFGUIDE_CHECK}" == "1" ]; then
python util/refguide_check.py --doctests
else
pytest --pyargs pywt
fi
popd
test_pywavelets_macos:
name: macos-cp${{ matrix.python-version }}-${{ matrix.OPTIONS_NAME }}
runs-on: macos-latest
env:
MPLBACKEND: Agg
CYTHON_TRACE: 1
CYTHONSPEC: cython
NUMPY_MIN: numpy==1.20.3
CYTHON_MIN: cython==0.29.18
SCIPY_MIN: scipy==1.2.3
strategy:
# Ensure that a wheel builder finishes even if another fails
fail-fast: false
matrix:
python-version: [3.8, '3.11']
MINIMUM_REQUIREMENTS: [0]
USE_SCIPY: [0]
USE_SDIST: [0]
USE_WHEEL: [0]
REFGUIDE_CHECK: [0]
PIP_FLAGS: [""]
OPTIONS_NAME: ["default"]
include:
- python-version: '3.8'
MINIMUM_REQUIREMENTS: 1
OPTIONS_NAME: "osx-minimum-req"
- python-version: '3.10'
PIP_FLAGS: "--pre"
OPTIONS_NAME: "pre-releases"
steps:
- name: Checkout PyWavelets
uses: actions/checkout@v3
- name: Setup Python
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version}}
- name: Build package
env:
VERSION: ${{ matrix.python-version }}
MINIMUM_REQUIREMENTS: ${{ matrix.MINIMUM_REQUIREMENTS }}
PIP_FLAGS: ${{ matrix.PIP_FLAGS }}
USE_WHEEL: ${{ matrix.USE_WHEEL }}
USE_SDIST: ${{ matrix.USE_SDIST }}
USE_SCIPY: ${{ matrix.USE_SCIPY }}
REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }}
CC: /usr/bin/clang
CXX: /usr/bin/clang++
run: |
uname -a
df -h
ulimit -a
which python
python --version
pip install --upgrade pip build
# Set numpy version first, other packages link against it
if [ "${MINIMUM_REQUIREMENTS}" == "1" ]; then
pip install ${CYTHON_MIN} ${NUMPY_MIN}
if [ "${USE_SCIPY}" == "1" ]; then pip install ${SCIPY_MIN}; fi
else
pip install cython numpy
if [ "${USE_SCIPY}" == "1" ]; then pip install scipy; fi
fi
pip install matplotlib pytest
set -o pipefail
if [ "${USE_WHEEL}" == "1" ]; then
pip wheel . -v
pip install pywavelets*.whl -v
elif [ "${USE_SDIST}" == "1" ]; then
python -m build --sdist
pip install pywavelets* -v
elif [ "${REFGUIDE_CHECK}" == "1" ]; then
pip install sphinx numpydoc
pip install . -v
else
pip install . -v
fi
- name: Run tests
env:
PIP_FLAGS: ${{ matrix.PIP_FLAGS }}
USE_WHEEL: ${{ matrix.USE_WHEEL }}
USE_SDIST: ${{ matrix.USE_SDIST }}
REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }}
run: |
# Move out of source directory to avoid finding local pywt
pushd demo
if [ "${USE_WHEEL}" == "1" ]; then
pytest --pyargs pywt
python ../pywt/tests/test_doc.py
elif [ "${USE_SDIST}" == "1" ]; then
pytest --pyargs pywt
python ../pywt/tests/test_doc.py
elif [ "${REFGUIDE_CHECK}" == "1" ]; then
python util/refguide_check.py --doctests
else
pytest --pyargs pywt
fi
popd