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setup.py
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setup.py
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from setuptools import setup
setup(
name='inspirems',
version='2.0rc7',
description='Helping to integrate Spectral Predictors and Rescoring.',
author='John Cormican, Juliane Liepe, Martin Pasen',
author_email='juliane.liepe@mpinat.mpg.de',
packages=[
'inspire',
'inspire.input',
'inspire.quant',
'inspire.epitope',
'inspire.plot_spectra',
],
long_description=open('README.md').read(),
long_description_content_type='text/markdown',
py_modules=[
'inspire',
'inspire.input',
'inspire.quant',
'inspire.epitope',
'inspire.plot_spectra',
],
entry_points={
'console_scripts': [
'inspire=inspire.run:run_inspire'
]
},
python_requires='>=3.11',
install_requires=[
'absl-py==2.0.0',
'astunparse==1.6.3',
'biopython==1.83',
'cachetools==5.3.2',
'certifi==2023.11.17',
'charset-normalizer==3.3.2',
'contourpy==1.2.0',
'cycler==0.12.1',
'docker==7.0.0',
'flatbuffers==23.5.26',
'fonttools==4.45.1',
'gast==0.5.4',
'google-auth==2.23.4',
'google-auth-oauthlib==1.1.0',
'google-pasta==0.2.0',
'grpcio==1.59.3',
'h5py==3.10.0',
'idna==3.4',
'joblib==1.3.2',
'kaleido==0.2.1',
'keras==2.15.0',
'kiwisolver==1.4.5',
'libclang==16.0.6',
'lxml==4.9.3',
'logomaker==0.8',
'Markdown==3.5.1',
'MarkupSafe==2.1.3',
'matplotlib==3.8.2',
'ml-dtypes==0.2.0',
'numpy==1.26.2',
'oauthlib==3.2.2',
'opt-einsum==3.3.0',
'packaging==23.2',
'pandas==2.1.3',
'patsy==0.5.3',
'Pillow==10.1.0',
'plotly==5.18.0',
'polars==0.19.15',
'protobuf==4.23.4',
'pyarrow==14.0.1',
'pyasn1==0.5.1',
'pyasn1-modules==0.3.0',
'pyparsing==3.1.1',
'PyPDF2==3.0.1',
'pyteomics==4.6.3',
'python-dateutil==2.8.2',
'PyYAML==6.0.1',
'requests==2.31.0',
'requests-oauthlib==1.3.1',
'rsa==4.9',
'scikit-learn==1.3.2',
'scipy==1.11.4',
'seaborn==0.13.0',
'six==1.16.0',
'statsmodels==0.14.0',
'tenacity==8.2.3',
'tensorboard==2.15.1',
'tensorboard-data-server==0.7.2',
'tensorflow==2.15.0',
'tensorflow-estimator==2.15.0',
'termcolor==2.3.0',
'threadpoolctl==3.2.0',
'typing_extensions==4.8.0',
'tzdata==2023.3',
'urllib3==2.1.0',
'Werkzeug==3.0.1',
'wrapt==1.14.1',
'xgboost==2.0.2',
'xlsxwriter==3.1.9',
],
project_urls={
'Homepage': 'https://github.com/QuantSysBio/inSPIRE',
'Tracker': 'https://github.com/QuantSysBio/inSPIRE/issues',
},
)