Straighten_app

A PyThon application for straighten chromosomes described in the following paper:

• Improving Classification of Curved Chromosomes in Karyotyping using CNN-based Deformation
• Video demo: https://youtu.be/aJ3REQeBrGo

Installation & requirements

Assuming Python and pip are set up, the Python-packages used by this code can be installed using:

pip install -r requirements.txt

Create a 'weight' folder and download the pretrained weight for straightening chromosome by spatial transformer network at pretrained in that file

• Note: PyImageJ requires OpenJDK and Maven to be installed. See more installation here

Run demo

When the installation is finished, run the main_handel.py file to start the application, it will take a moment to start at the fist time.