created the task factory and task for the import, changed the name of

the packages and further deleted some classes to uncluster the packages

pom.xml

@@ -5,14 +5,14 @@
 
 	<properties>
 		<bundle.symbolicName>mgG</bundle.symbolicName>
-		<bundle.namespace>uni.kul.rega.mgG.internal</bundle.namespace>
+		<bundle.namespace>be.kuleuven.mgG.internal</bundle.namespace>
 		<cytoscape.api.version>3.8.0</cytoscape.api.version>
 
 		<maven-bundle-plugin.version>3.5.0</maven-bundle-plugin.version>
 		<osgi.api.version>4.2.0</osgi.api.version>
 	</properties>
 
-	<groupId>uni.kul.rega</groupId>
+	<groupId>be.kuleuven</groupId>
 	<artifactId>mgG</artifactId>
 	<packaging>bundle</packaging>
 	<name>${bundle.symbolicName}</name>

src/main/java/uni/kul/rega/mgG/internal/CyActivator.java → src/main/java/be/kuleuven/mgG/internal/CyActivator.java

@@ -1,4 +1,4 @@
-package uni.kul.rega.mgG.internal;
+package be.kuleuven.mgG.internal;
 
 import static org.cytoscape.work.ServiceProperties.COMMAND;
 import static org.cytoscape.work.ServiceProperties.COMMAND_DESCRIPTION;
@@ -45,7 +45,8 @@
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
-import uni.kul.rega.mgG.internal.tasks.MicroBetaGUIImportAction;
+import be.kuleuven.mgG.internal.tasks.ImportFileTaskFactory;
+import be.kuleuven.mgG.internal.model.MGGManager;
 
 
 //import uni.kul.rega.mgG.internal.model.ScNVManager;
@@ -58,25 +59,43 @@ public CyActivator() {
 	}
 
 	public void start(BundleContext bc) {
-		//final StreamUtil streamUtil = getService(bc, StreamUtil.class);
+		final StreamUtil streamUtil = getService(bc, StreamUtil.class);
 		final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
 
-		//final ScNVManager scNVManager = new ScNVManager(serviceRegistrar);
+		final MGGManager MGGManager = new MGGManager(serviceRegistrar);
 
-
-
-		// scNVManager.addSource(new HCASource(scNVManager));
-		//scNVManager.addSource(new FileSource(scNVManager));
+		//MGGManager.addSource(new FileSource(NGGManager));
 
 
 		// Get services
-        CySwingApplication cytoscapeDesktopService = getService(bc, CySwingApplication.class);
-        CyApplicationManager cyApplicationManager = getService(bc, CyApplicationManager.class);
+		CyApplicationManager appManager = getService(bc, CyApplicationManager.class);
+        CySwingApplication swingApplication = getService(bc, CySwingApplication.class);
+
+
+
+        Properties props = new Properties();
+		props.setProperty(TITLE, "Import from file...");
+		props.setProperty(PREFERRED_MENU, "Apps.MGG.Load TSV/CSV[10.1]");
+		props.setProperty(IN_TOOL_BAR, "FALSE");
+		props.setProperty(IN_MENU_BAR, "TRUE");
+		props.setProperty(MENU_GRAVITY, "30.0");
+		props.setProperty(COMMAND_NAMESPACE, "MGG");
+		props.setProperty(COMMAND_DESCRIPTION, "Load a file from csv");
+		props.setProperty(COMMAND, "load csv");
+
+        // Register taskfactory
+        ImportFileTaskFactory mggImportFileTaskFactory = new ImportFileTaskFactory(swingApplication, appManager);
+
+        registerService(bc, mggImportFileTaskFactory, TaskFactory.class, props);
+    }
+
+
+
+
+
 
-        // Register the action
-        MicroBetaGUIImportAction action = new MicroBetaGUIImportAction(cytoscapeDesktopService, cyApplicationManager);
-        registerService(bc, action, CyAction.class);
-
+
+
 
 
 
@@ -87,5 +106,5 @@ public void start(BundleContext bc) {
 
 		// Start the thread the loads all of the species
 		//Species.loadSpecies(scNVManager);
-	}
+
 }

src/main/java/uni/kul/rega/mgG/internal/api/DoubleMatrix.java → src/main/java/be/kuleuven/mgG/internal/matrix/DoubleMatrix.java

@@ -1,4 +1,4 @@
-package uni.kul.rega.mgG.internal.api;
+package be.kuleuven.mgG.internal.matrix;
 
 public interface DoubleMatrix extends Matrix {
 	public double[][] getDoubleMatrix(double missing);

src/main/java/uni/kul/rega/mgG/internal/api/IntegerMatrix.java → src/main/java/be/kuleuven/mgG/internal/matrix/IntegerMatrix.java

@@ -1,4 +1,4 @@
-package uni.kul.rega.mgG.internal.api;
+package be.kuleuven.mgG.internal.matrix;
 
 public interface IntegerMatrix extends Matrix {
 	public int[][] getIntegerMatrix(int missing);

src/main/java/uni/kul/rega/mgG/internal/api/Matrix.java → src/main/java/be/kuleuven/mgG/internal/matrix/Matrix.java

@@ -1,4 +1,4 @@
-package uni.kul.rega.mgG.internal.api;
+package be.kuleuven.mgG.internal.matrix;
 
 import java.util.List;
 

src/main/java/uni/kul/rega/mgG/internal/api/StringMatrix.java → src/main/java/be/kuleuven/mgG/internal/matrix/StringMatrix.java

@@ -1,4 +1,4 @@
-package uni.kul.rega.mgG.internal.api;
+package be.kuleuven.mgG.internal.matrix;
 
 public interface StringMatrix extends Matrix {
 	public String[][] getStringMatrix();