ENA_tool

Convenient dowloader of full metadata and raw files for ENA.

• Fetches all samples info and metadata from xml files at ENA browser for a project by project id (accession).
• Stores this information to .csv and .html files.
• Allows to download .fastq files using enaDataGet

The examples of usage this tool and the outputs you can find in examples folder.

To use, please install:

• EnaTool: pip install ENATool
• enaDataGet: follow the instructions

Before usage, please, make sure, that enaDataGet is installed properly and that command like enaDataGet -f fastq -a ACCESSION works fine.