fix network timeout bug.

REDetector · Feb 5, 2016 · d0849fb · d0849fb
1 parent 6782f85
commit d0849fb
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Showing 4 changed files with 4 additions and 3 deletions.
diff --git a/red/com/xl/database/DatabaseTreeModel.java b/red/com/xl/database/DatabaseTreeModel.java
@@ -42,7 +42,7 @@ public class DatabaseTreeModel {
     public DatabaseTreeModel() {
         List<String> databaseNames = DatabaseManager.getInstance().getAllDatabase();
         root = new DefaultMutableTreeNode("Samples in MySQL Database");
-        allSamples = new HashSet<>();
+        allSamples = new HashSet<String>();
         DefaultTreeModel treeModel = new DefaultTreeModel(root);
         for (String databaseName : databaseNames) {
             DefaultMutableTreeNode parentNode = new DefaultMutableTreeNode(databaseName);

diff --git a/red/com/xl/net/genomes/UpdateChecker.java b/red/com/xl/net/genomes/UpdateChecker.java
@@ -119,6 +119,8 @@ public static String getLatestVersionNumber() throws NetworkException {
             URL updateURL = new URL(Global.VERSION_PAGE);
 
             URLConnection connection = updateURL.openConnection();
+            connection.setConnectTimeout(10000);
+            connection.setReadTimeout(10000);
             connection.setUseCaches(false);
 
             DataInputStream d = new DataInputStream(new BufferedInputStream(connection.getInputStream()));

diff --git a/red/com/xl/parsers/annotationparsers/IgvGenomeParser.java b/red/com/xl/parsers/annotationparsers/IgvGenomeParser.java
@@ -268,7 +268,6 @@ private void parseNewFasta(String fastaFile, String fastaCacheFile) throws RedEx
                 "RED has detected there is no fasta file in your system.\n"
                     + "The fasta file would be downloaded on the background after hitting 'ok' button. Would you like to download it?",
                 "Download fasta file", JOptionPane.OK_CANCEL_OPTION);
-            logger.info("Answer: " + ans);
             if (ans == 0) {
                 FastaFileParser parser = new FastaFileParser(genome);
                 parser.parseNewFasta(fastaFile, fastaCacheFile);

diff --git a/red/com/xl/utils/NetworkDetector.java b/red/com/xl/utils/NetworkDetector.java
@@ -34,7 +34,7 @@ public class NetworkDetector {
     private static final Logger logger = LoggerFactory.getLogger(NetworkDetector.class);
 
     public static void isNetworkAvailable(INetwork listener) {
-        accessNetWork("http://www.github.com", listener);
+        accessNetWork("http://www.microsoft.com", listener);
     }
 
     public static void accessNetWork(final String path, final INetwork listener) {