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pip install -e . RuntimeError: Running cythonize failed! #79

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juanpabloaj opened this issue Jan 16, 2017 · 10 comments
Closed

pip install -e . RuntimeError: Running cythonize failed! #79

juanpabloaj opened this issue Jan 16, 2017 · 10 comments

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@juanpabloaj
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When I try install pyflux from the source code

pip install -e .

I get this error message

    Complete output from command python setup.py egg_info:
    /Users/pablo/.envs/pyflux/bin/python3: can't open file '/Users/pablo/src/pyflux/tools/cythonize.py': [Errno 2] No such file or directory
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/Users/pablo/src/pyflux/setup.py", line 92, in <module>
        setup_package()
      File "/Users/pablo/src/pyflux/setup.py", line 70, in setup_package
        generate_cython(PACKAGE_NAME)
      File "/Users/pablo/src/pyflux/setup.py", line 38, in generate_cython
        raise RuntimeError("Running cythonize failed!")
    RuntimeError: Running cythonize failed!
    Cythonizing sources
@RJT1990
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RJT1990 commented Jan 23, 2017

Yes - tools folder should be in the highest directory of the repo. Will commit this tomorrow so you can build the source locally and make contributions!

@howardnewyork
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howardnewyork commented Feb 2, 2017 •
edited
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Was this ever fixed? The tools directory still seems to be missing?

Also, when I alternately try pip install pyflux, I get an error:
Unknown MS Compiler version 1900

@RJT1990
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RJT1990 commented Feb 2, 2017

Sorry, I haven't got around to doing this yet because of work. Hopefully will get some time this month.

@RJT1990
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RJT1990 commented Feb 2, 2017

tools folder now in the repo

@RJT1990 RJT1990 closed this as completed Feb 2, 2017
@juanpabloaj
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when I try to install I get this error message

pip install -e .
Obtaining file:///Users/pablo/src/pyflux
    Complete output from command python setup.py egg_info:
    warning: pyflux/gpnarx/kernel_routines.pyx:151:31: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    warning: pyflux/gpnarx/kernel_routines.pyx:153:31: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    warning: pyflux/gpnarx/kernel_routines.pyx:153:94: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    warning: pyflux/gpnarx/kernel_routines.pyx:169:31: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    warning: pyflux/gpnarx/kernel_routines.pyx:171:31: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    warning: pyflux/gpnarx/kernel_routines.pyx:171:98: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    warning: pyflux/gpnarx/kernel_routines.pyx:186:31: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    warning: pyflux/gpnarx/kernel_routines.pyx:188:31: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    warning: pyflux/gpnarx/kernel_routines.pyx:188:102: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    warning: pyflux/gpnarx/kernel_routines.pyx:203:31: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    warning: pyflux/gpnarx/kernel_routines.pyx:205:31: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    warning: pyflux/gpnarx/kernel_routines.pyx:205:104: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined
    pyflux
    Processing pyflux/arma/arma_recursions.pyx
    Processing pyflux/arma/nn_architecture.pyx
    Processing pyflux/families/gas_recursions.pyx
    Processing pyflux/families/poisson_kalman_recursions.pyx
    Processing pyflux/garch/garch_recursions.pyx
    Processing pyflux/gas/gas_core_recursions.pyx
    Processing pyflux/gpnarx/kernel_routines.pyx
    Processing pyflux/inference/bbvi_routines.pyx
    Processing pyflux/inference/metropolis_sampler.pyx
    Processing pyflux/ssm/kalman.pyx
    Processing pyflux/var/var_recursions.pyx
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/Users/pablo/src/pyflux/setup.py", line 92, in <module>
        setup_package()
      File "/Users/pablo/src/pyflux/setup.py", line 84, in setup_package
        install_requires=['numpy', 'pandas', 'scipy', 'numdifftools','patsy'])
      File "/Users/pablo/.envs/pyflux/lib/python3.5/site-packages/numpy/distutils/core.py", line 135, in setup
        config = configuration()
      File "/Users/pablo/src/pyflux/setup.py", line 48, in configuration
        config.add_subpackage(PACKAGE_NAME)
      File "/Users/pablo/.envs/pyflux/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 1001, in add_subpackage
        caller_level = 2)
      File "/Users/pablo/.envs/pyflux/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 970, in get_subpackage
        caller_level = caller_level + 1)
      File "/Users/pablo/.envs/pyflux/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 907, in _get_configuration_from_setup_py
        config = setup_module.configuration(*args)
      File "pyflux/setup.py", line 10, in configuration
        config.add_subpackage('__check_build')
      File "/Users/pablo/.envs/pyflux/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 1001, in add_subpackage
        caller_level = 2)
      File "/Users/pablo/.envs/pyflux/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 963, in get_subpackage
        caller_level = caller_level+1)
      File "/Users/pablo/.envs/pyflux/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 745, in __init__
        raise ValueError("%r is not a directory" % (package_path,))
    ValueError: 'pyflux/__check_build' is not a directory
    Cythonizing sources

@howardnewyork
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howardnewyork commented Feb 3, 2017 via email

@RJT1990
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RJT1990 commented Feb 3, 2017

Hi guys, please accept my apologies - I did not upload the __check_build directory along with the tools last night. I am going to upload now. Apologies again!

@RJT1990
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RJT1990 commented Feb 3, 2017

Now uploaded to the repo - let me know if that works for you.

@juanpabloaj
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now work 🎉

thanks @RJT1990

@RJT1990
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RJT1990 commented Feb 3, 2017

Glad to hear it :D

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@juanpabloaj @howardnewyork @RJT1990