#34

team-private/docker.md

@@ -5,20 +5,21 @@ In order to run the RTX POC software in a Docker container, it is easiest to use
 This procedure will require the AWS CLI to be installed into the host OS:
 
     sudo pip3 install awscli
+
+and configured.
 
 Next, you'll need to make sure that you have a file system (at least 100 GB) mounted as `/mnt/data`. 
-To unpack and run the RTX POC software in Docker using the `run_container_ncats.saramsey.org.sh` script.
+To unpack and run the RTX POC software in Docker:
 
     cd /mnt/data
-    wget https://raw.githubusercontent.com/dkoslicki/NCATS/master/code/docker/run_container_ncats.saramsey.org.sh
     aws s3 cp s3://ramseylab/ncats/ncats.saramsey.org/ncats3_version3.tar.gz .
     docker load < ncats3_version3.tar.gz
-    sh run_container_ncats.saramsey.org.sh
-    sudo docker exec -it ncats bash
+    docker run -td -p 80:80 -p 7474:7474 -p 7687:7687 --name PRODUCTION --mount type=bind,source=/mnt/data,target=/mnt/data ncats3:version4
+    sudo docker exec -it PRODUCTION bash
     (in the container)# mkdir -p /mnt/data/orangeboard/code
     (in the container)# cd /mnt/data/orangeboard
-    (in the container)# aws s3 cp s3://ramseylab/ncats/ncats.saramsey.org/neo4j_graphdb.tar.gz .
-    (in the container)# tar xvzf neo4j_graphdb.tar.gz
+    (in the container)# wget http://rtxkgdump.saramsey.org/040918-175406.tar.gz
+    (in the container)# tar xvzf 040918-175406.tar.gz
     (in the container)# mkdir code
     (in the container)# chown rt.rt code
     (in the container)# service neo4j start
@@ -35,7 +36,7 @@ The above steps should prepare the RTX POC software to be used with your Docker
 
 - Update code:
 
-    sudo docker exec -it rtxsteve /usr/bin/sudo -H -u rt bash -c 'cd ~/kg-construction && git pull origin newkg'
+    sudo docker exec -it rtxsteve /usr/bin/sudo -H -u rt bash -c 'cd ~/kg-construction && git pull origin master'
 
 - Run in a screen session: