Update min versions of scipy and setuptools_scm #1464

Workflow file for this run

.github/workflows/testsuite.yaml at 229dae6

	name: Tests
	on: [push, pull_request]

	concurrency:
	group: ${{ github.workflow }}-${{ github.head_ref \|\| github.run_id }}
	cancel-in-progress: true

	jobs:
	tests:
	env:
	ENV_NAME: ${{ matrix.env_name }}
	PYTHON: ${{ matrix.python-version }}
	OS: ${{ matrix.os }}
	name: Testing
	runs-on: ${{ matrix.os }}
	defaults:
	run:
	# Adding -l {0} helps ensure conda can be found properly.
	shell: bash -l {0}
	strategy:
	fail-fast: false
	matrix:
	os: [ubuntu-latest, macos-latest]
	python-version: ["3.10", "3.11", "3.12"]
	env_name: [pyuvsim_tests_openmpi]
	include:
	- env_name: pyuvsim_tests_mpich
	python-version: "3.11"
	os: ubuntu-latest
	- env_name: pyuvsim_tests_mpich
	python-version: "3.11"
	os: macos-latest
	steps:
	- uses: actions/checkout@main
	with:
	fetch-depth: 0

	- name: Setup Minimamba
	uses: conda-incubator/setup-miniconda@v3
	with:
	miniforge-variant: Mambaforge
	miniforge-version: latest
	use-mamba: true
	python-version: ${{ env.PYTHON }}
	environment-file: ci/${{ env.ENV_NAME }}.yaml
	activate-environment: ${{ env.ENV_NAME }}

	- name: Conda Info
	run: \|
	conda info -a
	conda list
	PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
	if [[ $PYVER != ${{ env.PYTHON }} ]]; then
	exit 1;
	fi

	- name: Install
	# calling git right before the install seems to prevent a time-out within setuptools_scm on MacOS
	run: \|
	git describe --tags
	git version
	SETUPTOOLS_SCM_DEBUG=1 pip install --no-deps .

	- name: Run Tests
	run: \|
	python -m pytest -n auto --cov=pyuvsim --cov-config=.coveragerc --cov-report xml:./coverage.xml --junitxml=test-reports/xunit.xml

	- name: Upload Coverage
	uses: codecov/codecov-action@v4
	if: success()
	with:
	token: ${{secrets.CODECOV_TOKEN}} #required
	file: ./coverage.xml #optional
	env_vars: OS,PYTHON
	fail_ci_if_error: true

	# Use pip for diversity
	# do this on min_deps because it's hard to get mpi4py to install from pip
	min_deps:
	env:
	PYTHON: "3.11"
	name: Min Deps Testing
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@main
	with:
	fetch-depth: 0

	- name: Setup Python
	uses: actions/setup-python@v4
	with:
	python-version: ${{ env.PYTHON }}

	# Just install the test requirements, also install pytest-xdist for speed
	- name: Install
	run: \|
	pip install -e .[test]
	pip install pytest-xdist

	- name: Environment Info
	run: \|
	pip list
	PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
	if [[ $PYVER != ${{ env.PYTHON }} ]]; then
	exit 1;
	fi

	- name: Run Tests
	run: \|
	python -m pytest -n auto --cov=pyuvsim --cov-config=.coveragerc --cov-report xml:./coverage.xml

	- uses: codecov/codecov-action@v4
	if: success()
	with:
	token: ${{secrets.CODECOV_TOKEN}} #required
	files: ./coverage.xml #optional

	min_versions:
	env:
	ENV_NAME: min_versions
	PYTHON: "3.10"
	name: Min Versions Testing
	defaults:
	run:
	# Adding -l {0} helps ensure conda can be found properly.
	shell: bash -l {0}
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@main
	with:
	fetch-depth: 0
	- name: Setup Minimamba
	uses: conda-incubator/setup-miniconda@v3
	with:
	miniforge-variant: Mambaforge
	miniforge-version: latest
	use-mamba: true
	python-version: ${{ env.PYTHON }}
	environment-file: ci/${{ env.ENV_NAME }}.yaml
	activate-environment: ${{ env.ENV_NAME }}

	- name: Conda Info
	run: \|
	conda info -a
	conda list
	PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
	if [[ $PYVER != ${{ env.PYTHON }} ]]; then
	exit 1;
	fi

	- name: Install
	run: \|
	pip install --no-deps .

	- name: Run Tests
	run: \|
	python -m pytest -n auto --cov=pyuvsim --cov-config=.coveragerc --cov-report xml:./coverage.xml --junitxml=test-reports/xunit.xml

	- uses: codecov/codecov-action@v4
	if: success()
	with:
	token: ${{secrets.CODECOV_TOKEN}} #required
	file: ./coverage.xml #optional
	env_vars: OS,PYTHON
	fail_ci_if_error: true

	warning_test:
	env:
	ENV_NAME: pyuvsim_tests_mpich
	PYTHON: "3.11"
	name: Warning Test
	runs-on: ubuntu-latest
	defaults:
	run:
	# Adding -l {0} helps ensure conda can be found properly.
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@main
	with:
	fetch-depth: 0

	- name: Setup Minimamba
	uses: conda-incubator/setup-miniconda@v3
	with:
	miniforge-variant: Mambaforge
	miniforge-version: latest
	use-mamba: true
	python-version: ${{ env.PYTHON }}
	environment-file: ci/${{ env.ENV_NAME }}.yaml
	activate-environment: ${{ env.ENV_NAME }}

	- name: Conda Info
	run: \|
	conda info -a
	conda list
	PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
	if [[ $PYVER != ${{ env.PYTHON }} ]]; then
	exit 1;
	fi

	- name: Install
	run: \|
	pip install --no-deps .

	- name: Run Tests
	run: \|
	python -m pytest -n auto -W error --cov=pyuvsim --cov-config=.coveragerc --cov-report xml:./coverage.xml --junitxml=test-reports/xunit.xml

	- name: Upload Coverage
	uses: codecov/codecov-action@v4
	if: success()
	with:
	token: ${{secrets.CODECOV_TOKEN}} #required
	file: ./coverage.xml #optional
	env_vars: OS,PYTHON
	fail_ci_if_error: true

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Update min versions of scipy and setuptools_scm #1464

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Update min versions of scipy and setuptools_scm #1464

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Workflow file for this run