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Add errors on separate lines for coverage #4301

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Add errors on separate lines for coverage #4301

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1507209
add whitespace to remove spurious coverage of inlined src/ error bran…
Mar 13, 2020
602b194
include regex to CRAN_Release
Mar 13, 2020
b8db05d
do warnings as well
Mar 13, 2020
d1f9dc5
done STOP
Mar 13, 2020
806a580
nothing for DTWARN
Mar 13, 2020
77e8762
adding some coverage tests for newly uncovered lines
Mar 14, 2020
1d5c7ac
typo
Mar 14, 2020
876f693
small fixes
Mar 14, 2020
1b0122e
more tests
Mar 14, 2020
914b749
fix some tests, typos
Mar 14, 2020
b3502bc
more tests & nocov
Mar 14, 2020
c055e43
more tests
Mar 15, 2020
e1b1550
typos
Mar 15, 2020
e8c41ea
more tests, nocov
Mar 15, 2020
9183810
not really reproducing the CI errors locally. managed to get two on -…
Mar 15, 2020
c524c56
found the typo
Mar 15, 2020
75ba288
two more files
Mar 15, 2020
baeb768
+tests
Mar 15, 2020
a3c4fa6
test #s
Mar 15, 2020
5611fee
one more spate of tests for the night
Mar 15, 2020
3c87dd7
cover all but one line
Mar 16, 2020
95e88f8
missed nocov
Mar 16, 2020
4e69db6
one more nocov
Mar 16, 2020
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8 changes: 8 additions & 0 deletions .dev/CRAN_Release.cmd
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Original file line number Diff line number Diff line change
Expand Up @@ -153,6 +153,14 @@ grep -nE "(llu|lld|zd|zu)" src/*.[hc]
grep -P "\t" ./R/*.R
grep -P "\t" ./src/*.c

# all error branches should be on a new line to be properly included in codecov; exceptions:
# (1) in a comment (pattern: after // or after \s*[*]
# (2) in '} else error(' pattern (if else is covered, so is the error)
# (3) in #define macros
for type in error warning STOP DTWARN Error; do
grep -Enr "\b$type[(]" src --include=*.c | grep -Ev "^src\/[a-zA-Z-]+[.]c:[0-9]+:\s*(?:(?:[}]?\s*else\s*)?$type|#define|[*]|.*\/\/.*$type)"
done

# No T or F symbols in tests.Rraw. 24 valid F (quoted, column name or in data) and 1 valid T at the time of writing
grep -n "[^A-Za-z0-9]T[^A-Za-z0-9]" ./inst/tests/tests.Rraw
grep -n "[^A-Za-z0-9]F[^A-Za-z0-9]" ./inst/tests/tests.Rraw
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76 changes: 73 additions & 3 deletions inst/tests/tests.Rraw
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Original file line number Diff line number Diff line change
Expand Up @@ -54,6 +54,7 @@ if (exists("test.data.table", .GlobalEnv, inherits=FALSE)) {
test = data.table:::test
uniqlengths = data.table:::uniqlengths
uniqlist = data.table:::uniqlist
veqseq = data.table:::vecseq
which_ = data.table:::which_
which.first = data.table:::which.first
which.last = data.table:::which.last
Expand Down Expand Up @@ -6312,15 +6313,13 @@ options(datatable.optimize = Inf)

# fread dec=',' e.g. France
test(1439, fread("A;B\n1;2,34\n", dec="12"), error="nchar(dec) == 1L is not TRUE")
test(1440, fread("A;B\n8;2,34\n", dec="1"), data.table(A=8L, B="2,34"))
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!dec %chin% c('.', ',') is implied incorrect by L1179 of fread.c @ master:

dec='' not allowed. Should be '.' or ','

?fread is not as strict:

The decimal separator as in utils::read.csv. If not "." (default) then usually ",". See details.

Took a conservative approach for now, and blocked !dec %chin% c(',', '.'). But that broke two tests (1440 and 1444.2 here).

dec='1' and dec='*' ran without errors... happy to restore this to work, and change the error/message found in fread.c.

test(1441, fread("A;B\n8;2,34\n", dec=","), data.table(A=8L, B=2.34))
test(1442, fread("A;B\n1;2,34\n", sep=".", dec="."), error="sep == dec ('.') is not allowed")
test(1443, fread("A;B\n1;2,34\n", dec=",", sep=","), error="sep == dec (',') is not allowed")

# sep=".", issue #502
input = paste( paste("192.168.4.", 1:10, sep=""), collapse="\n")
test(1444.1, fread(input, sep=".", dec="*"), ans<-data.table(V1=192L,V2=168L,V3=4L,V4=1:10))
test(1444.2, fread(input, sep=".", dec=","), ans)
test(1444.2, fread(input, sep=".", dec=","), ans<-data.table(V1=192L,V2=168L,V3=4L,V4=1:10))
test(1444.3, fread(paste(paste("192. 168. 4. ", 1:10, sep = ""), collapse="\n"), sep=".", dec=","), ans)
test(1444.4, fread(paste(paste("Hz.BB.GHG.", 1:10, sep = ""), collapse="\n"), sep=".", dec=","),
data.table(V1="Hz",V2="BB",V3="GHG",V4=1:10))
Expand Down Expand Up @@ -16846,3 +16845,74 @@ A = data.table(A=c(complex(real = 1:3, imaginary=c(0, -1, 1)), NaN))
test(2138.3, rbind(A,B), data.table(A=c(as.character(A$A), B$A)))
A = data.table(A=as.complex(rep(NA, 5)))
test(2138.4, rbind(A,B), data.table(A=c(as.character(A$A), B$A)))

# tests caught by introducing newlines in #4301
test(2139.01, getDTthreads(8L), error="'verbose' must be TRUE or FALSE")
test(2139.02, setDTthreads(1:2), error='threads= must be either NULL.*length 2')
test(2139.03, setDTthreads(1+0i), error='threads= must be either NULL.*type integer/numeric')
DT = data.table(1L)
invisible(alloc.col(DT, 10010L))
test(2139.04, alloc.col(DT), DT, warning='greater than 10,000 items over-allocated')
test(2139.05, alloc.col(DT, verbose = 1L), error="verbose must be TRUE or FALSE")
test(2139.06, set(data.table(NULL), NULL, 1L, 1L), error="Input data.table has no columns")
test(2139.07, set(1L, NULL, 1L, 1L), error="object passed to assign isn't type VECSXP")
names(DT) = NULL
test(2139.08, set(DT, NULL, 1L, 2L), error="data.table passed to assign has no names")
test(2139.09, alloc.col(NULL), error="object passed to alloccol is NULL")
test(2139.10, alloc.col(1L), error="object passed to alloccol isn't type VECSXP")
test(2139.11, set(NULL, NULL, 1L, 1L), error="object passed to assign is NULL")
setDF(DT)
names(DT) = 'V1'
test(2139.12, set(DT, NULL, 'V2', 2L), error="set() on a data.frame is for changing existing columns")
setDT(DT)
invisible(alloc.col(DT, 10010L))
test(2139.13, set(DT, NULL, 'V2', 2L), DT, warning="greater than 10,000 items over-allocated")

txt = 'a,b\n1,2'
test(2139.14, fread(txt, sep=',', quote=','), error="sep == quote (',') is not allowed")
test(2139.15, fread(txt, dec='&'), error="dec='&' not allowed")
test(2139.16, fread(txt, quote='.', dec='.'), error="quote == dec ('.') is not allowed")
test(2139.17, fread(txt, integer64=letters), error="'integer64' must be a single character string")
test(2139.18, fread(txt, colClasses = list()), error="colClasses is type list but has no names")

test(2139.19, setNumericRounding(1:2), error="Rounding level must be a length-1 integer or numeric vector")
test(2139.20, setNumericRounding(-1), error="Rounding level must be 2, 1 or 0")

DT = data.table(1L)
names(DT) = NULL
test(2139.21, setcolorder(DT, 1L), error="data.table passed to setcolorder has no names")

# uniqueNlogical
test(2139.22, uniqueN(NA, na.rm=1), error="na.rm must be TRUE or FALSE")
test(2139.23, rleid(1, 1:2), error="All elements of input list must be of same length")
test(2139.24, uniqlengths(1L, 1:3), error="Input argument 'n' to 'uniqlengths' must be an integer vector of length 1")

old = options(datatable.optimize = 2L)
DT = data.table(a = 1:2, b = 1, f = factor(1), l = list(1))
test(2139.25, DT[ , sum(b, na.rm=1), by=a], error="na.rm must be TRUE or FALSE")
test(2139.26, DT[ , sum(f), by=a], error="sum is not meaningful for factors")
test(2139.27, DT[ , mean(b, na.rm=1), by=a], error="na.rm must be TRUE or FALSE")
test(2139.28, DT[ , mean(l), by=a], error="GForce mean can only be applied to columns, not .SD or similar")
test(2139.29, DT[ , mean(f), by=a], error="mean is not meaningful for factors")
test(2139.30, DT[ , min(b, na.rm=1), by=a], error="na.rm must be TRUE or FALSE")
test(2139.31, DT[ , min(l), by=a], error="GForce min can only be applied to columns, not .SD or similar")
test(2139.32, DT[ , min(f), by=a], error="min is not meaningful for factors")
test(2139.33, DT[ , max(b, na.rm=1), by=a], error="na.rm must be TRUE or FALSE")
test(2139.34, DT[ , max(l), by=a], error="GForce max can only be applied to columns, not .SD or similar")
test(2139.35, DT[ , max(f), by=a], error="max is not meaningful for factors")
test(2139.36, DT[ , median(b, na.rm=1), by=a], error="na.rm must be TRUE or FALSE")
test(2139.37, DT[ , median(l), by=a], error="GForce median can only be applied to columns, not .SD or similar")
test(2139.38, DT[ , median(f), by=a], error="median is not meaningful for factors")
test(2139.39, DT[ , var(b, na.rm=1), by=a], error="na.rm must be TRUE or FALSE")
test(2139.40, DT[ , var(l), by=a], error="GForce var/sd can only be applied to columns, not .SD or similar")
test(2139.41, DT[ , var(f), by=a], error="var/sd is not meaningful for factors")
test(2139.42, DT[ , prod(b, na.rm=1), by=a], error="na.rm must be TRUE or FALSE")
test(2139.43, DT[ , prod(l), by=a], error="GForce prod can only be applied to columns, not .SD or similar")
test(2139.44, DT[ , prod(f), by=a], error="prod is not meaningful for factors")
options(old)

test(2139.45, vecseq(NA, NA, NA), error="x must be an integer vector")
test(2139.46, vecseq(1L, NA, NA), error="len must be an integer vector")
test(2139.47, vecseq(1L, 1:2, NA), error="x and len must be the same length")
test(2139.48, vecseq(1L, 1L, 1L), error="clamp must be a double vector length 1")
test(2139.49, vecseq(1L, 1L, -1), error="clamp must be positive")
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