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frollmax1: frollmax, frollmax adaptive, left adaptive support #5889

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merged 21 commits into from
Jan 12, 2024

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  • frollmax normal
  • frollmax adaptive
  • left adaptive support

@jangorecki jangorecki changed the title frollmax1 frollmax1: frollmax, frollmax adaptive, left adaptive support Jan 8, 2024
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Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>
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jangorecki and others added 3 commits January 9, 2024 10:55
Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>
@jangorecki jangorecki changed the base branch from master to 1-15-99 January 9, 2024 10:02
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Thanks!

@jangorecki jangorecki merged commit 39f22a1 into 1-15-99 Jan 12, 2024
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@jangorecki jangorecki deleted the frollmax1 branch January 12, 2024 13:51
MichaelChirico added a commit that referenced this pull request Jan 14, 2024
* frollmax exact, buggy fast, no fast adaptive

* frollmax fast fixing bugs

* frollmax man to fix CRAN check

* frollmax fast adaptive non NA, dev

* froll docs, adaptive left

* no frollmax fast adaptive

* frollmax adaptive exact NAs handling

* PR summary in news

* copy-edit changes from reviews

Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* comment requested by Michael

* update NEWS file

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* add comment requested by Michael

* add comment about int iterator for loop over k-1 obs

* extra comments

* Revert "extra comments"

This reverts commit 03af0e3.

* add comments to frollmax and frollsum

* typo fix

---------

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>
@MichaelChirico
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Looks like covr::package_coverage() fails after this PR; quiet=FALSE gives a better error trace:

** testing if installed package can be loaded
Error: package or namespace load failed for ‘data.table’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/tmp/RtmpmqW3UL/R_LIBS35452f231af8/data.table/libs/data_table.so':
  /tmp/RtmpmqW3UL/R_LIBS35452f231af8/data.table/libs/data_table.so: undefined symbol: windowmax

I can't reproduce the issue outside {covr}, though, maybe it's a bug there? Something to do with an inline void declaration?

Anyway, just noting the issue for now -- presumably it is fixed later in the chain. Ignoring the covr reports in 1-15-99 for now.

@jangorecki
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Yes, it was fixed in this commit c5caf2c later on

@MichaelChirico
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Shall we just apply that as its own PR then? To get code coverage back working on 1-15-99

MichaelChirico added a commit to dvg-p4/data.table that referenced this pull request Feb 19, 2024
…able#5889)

* frollmax exact, buggy fast, no fast adaptive

* frollmax fast fixing bugs

* frollmax man to fix CRAN check

* frollmax fast adaptive non NA, dev

* froll docs, adaptive left

* no frollmax fast adaptive

* frollmax adaptive exact NAs handling

* PR summary in news

* copy-edit changes from reviews

Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* comment requested by Michael

* update NEWS file

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* add comment requested by Michael

* add comment about int iterator for loop over k-1 obs

* extra comments

* Revert "extra comments"

This reverts commit 03af0e3.

* add comments to frollmax and frollsum

* typo fix

---------

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>
MichaelChirico added a commit that referenced this pull request Feb 19, 2024
* Check for .datatable.aware being FALSE #5654

* Add tests

* Fix tests

* Simplify logic as suggested

* Band-aid on underlying selfrefok() problem for test

* Update news and add comment

* Fix transform slowness (#5493)

* Fix 5492 by limiting the costly deparse to `nlines=1`

* Implementing PR feedbacks

* Added  inside

* Fix typo in name

* Idiomatic use of  inside

* Separating the deparse line limit to a different PR

---------

Co-authored-by: Michael Chirico <chiricom@google.com>

* Improvements to the introductory vignette (#5836)

* Added my improvements to the intro vignette

* Removed two lines I added extra as a mistake earlier

* Requested changes

* switch to 3.2.0 R dep (#5905)

* frollmax1: frollmax, frollmax adaptive, left adaptive support (#5889)

* frollmax exact, buggy fast, no fast adaptive

* frollmax fast fixing bugs

* frollmax man to fix CRAN check

* frollmax fast adaptive non NA, dev

* froll docs, adaptive left

* no frollmax fast adaptive

* frollmax adaptive exact NAs handling

* PR summary in news

* copy-edit changes from reviews

Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* comment requested by Michael

* update NEWS file

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* add comment requested by Michael

* add comment about int iterator for loop over k-1 obs

* extra comments

* Revert "extra comments"

This reverts commit 03af0e3.

* add comments to frollmax and frollsum

* typo fix

---------

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* Run GHA jobs on 1-15-99 dev branch (#5909)

* Make declarations static for covr (#5910)

* botched rebase

* stray \

* smaller diff

* test #s

---------

Co-authored-by: Ofek <ofekshilon@gmail.com>
Co-authored-by: Michael Chirico <chiricom@google.com>
Co-authored-by: Ani <bloodraven166@gmail.com>
Co-authored-by: Jan Gorecki <J.Gorecki@wit.edu.pl>
Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>
MichaelChirico added a commit that referenced this pull request Apr 20, 2024
* 1.15.0 on CRAN. Bump to 1.15.99

* Fix transform slowness (#5493)

* Fix 5492 by limiting the costly deparse to `nlines=1`

* Implementing PR feedbacks

* Added  inside

* Fix typo in name

* Idiomatic use of  inside

* Separating the deparse line limit to a different PR

---------

Co-authored-by: Michael Chirico <chiricom@google.com>

* Improvements to the introductory vignette (#5836)

* Added my improvements to the intro vignette

* Removed two lines I added extra as a mistake earlier

* Requested changes

* Vignette typo patch (#5402)

* fix typos and grammatical mistakes

* fix typos and punctuation

* remove double spaces where it wasn't necessary

* fix typos and adhere to British English spelling

* fix typos

* fix typos

* add missing closing bracket

* fix typos

* review fixes

* Update vignettes/datatable-benchmarking.Rmd

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Update vignettes/datatable-benchmarking.Rmd

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Apply suggestions from code review benchmarking

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* remove unnecessary [ ] from datatable-keys-fast-subset.Rmd

* Update vignettes/datatable-programming.Rmd

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Update vignettes/datatable-reshape.Rmd

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* One last batch of fine-tuning

---------

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Michael Chirico <chiricom@google.com>

* Improved handling of list columns with NULL entries (#4250)

* Updated documentation for rbindlist(fill=TRUE)

* Print NULL entries of list as NULL

* Added news item

* edit NEWS, use '[NULL]' not 'NULL'

* fix test

* split NEWS item

* add example

---------

Co-authored-by: Michael Chirico <chiricom@google.com>
Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <benjamin.schwendinger@tuwien.ac.at>

* clarify that list input->unnamed list output (#5383)

* clarify that list input->unnamed list output

* Add example where make.names is used

* mention role of make.names

* fix subsetting issue in split.data.table (#5368)

* fix subsetting issue in split.data.table

* add a test

* drop=FALSE on inner [

* switch to 3.2.0 R dep (#5905)

* Allow early exit from check for eval/evalq in cedta (#5660)

* Allow early exit from check for eval/evalq in cedta

Done in the browser+untested, please take a second look :)

* Use %chin%

* nocov new code

* frollmax1: frollmax, frollmax adaptive, left adaptive support (#5889)

* frollmax exact, buggy fast, no fast adaptive

* frollmax fast fixing bugs

* frollmax man to fix CRAN check

* frollmax fast adaptive non NA, dev

* froll docs, adaptive left

* no frollmax fast adaptive

* frollmax adaptive exact NAs handling

* PR summary in news

* copy-edit changes from reviews

Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* comment requested by Michael

* update NEWS file

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* add comment requested by Michael

* add comment about int iterator for loop over k-1 obs

* extra comments

* Revert "extra comments"

This reverts commit 03af0e3.

* add comments to frollmax and frollsum

* typo fix

---------

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* Friendlier error in assignment with trailing comma (#5467)

* friendlier error in assignment with trailing comma

e.g. `DT[, `:=`(a = 1, b = 2,)`.

WIP. Need to add tests and such, but editing from browser before I forget.

* Another pass

* include unnamed indices on RHS too

* tests

* NEWS

* test numbering

* explicit example in NEWS

* Link to ?read.delim in ?fread to give a closer analogue of expected behavior (#5635)

* fread is similar to read.delim (#5634)

* Use ?read.csv / ?read.delim

---------

Co-authored-by: Michael Chirico <chiricom@google.com>
Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Run GHA jobs on 1-15-99 dev branch (#5909)

* Make declarations static for covr (#5910)

* class= argument for condition calls

* Unify logic with helper

* Add tests

* Use call.=FALSE where possible

* correct caught class

* strip call=/call.= handling

* botched merge

---------

Co-authored-by: Ofek <ofekshilon@gmail.com>
Co-authored-by: Ani <bloodraven166@gmail.com>
Co-authored-by: David Budzynski <56514985+davidbudzynski@users.noreply.github.com>
Co-authored-by: Scott Ritchie <sritchie73@gmail.com>
Co-authored-by: Benjamin Schwendinger <benjamin.schwendinger@tuwien.ac.at>
Co-authored-by: Jan Gorecki <J.Gorecki@wit.edu.pl>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>
Co-authored-by: Manuel López-Ibáñez <2620021+MLopez-Ibanez@users.noreply.github.com>
MichaelChirico added a commit that referenced this pull request Apr 23, 2024
* 1.15.0 on CRAN. Bump to 1.15.99

* Fix transform slowness (#5493)

* Fix 5492 by limiting the costly deparse to `nlines=1`

* Implementing PR feedbacks

* Added  inside

* Fix typo in name

* Idiomatic use of  inside

* Separating the deparse line limit to a different PR

---------

Co-authored-by: Michael Chirico <chiricom@google.com>

* Improvements to the introductory vignette (#5836)

* Added my improvements to the intro vignette

* Removed two lines I added extra as a mistake earlier

* Requested changes

* Vignette typo patch (#5402)

* fix typos and grammatical mistakes

* fix typos and punctuation

* remove double spaces where it wasn't necessary

* fix typos and adhere to British English spelling

* fix typos

* fix typos

* add missing closing bracket

* fix typos

* review fixes

* Update vignettes/datatable-benchmarking.Rmd

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Update vignettes/datatable-benchmarking.Rmd

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Apply suggestions from code review benchmarking

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* remove unnecessary [ ] from datatable-keys-fast-subset.Rmd

* Update vignettes/datatable-programming.Rmd

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Update vignettes/datatable-reshape.Rmd

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* One last batch of fine-tuning

---------

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Michael Chirico <chiricom@google.com>

* Improved handling of list columns with NULL entries (#4250)

* Updated documentation for rbindlist(fill=TRUE)

* Print NULL entries of list as NULL

* Added news item

* edit NEWS, use '[NULL]' not 'NULL'

* fix test

* split NEWS item

* add example

---------

Co-authored-by: Michael Chirico <chiricom@google.com>
Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <benjamin.schwendinger@tuwien.ac.at>

* clarify that list input->unnamed list output (#5383)

* clarify that list input->unnamed list output

* Add example where make.names is used

* mention role of make.names

* fix subsetting issue in split.data.table (#5368)

* fix subsetting issue in split.data.table

* add a test

* drop=FALSE on inner [

* switch to 3.2.0 R dep (#5905)

* Allow early exit from check for eval/evalq in cedta (#5660)

* Allow early exit from check for eval/evalq in cedta

Done in the browser+untested, please take a second look :)

* Use %chin%

* nocov new code

* frollmax1: frollmax, frollmax adaptive, left adaptive support (#5889)

* frollmax exact, buggy fast, no fast adaptive

* frollmax fast fixing bugs

* frollmax man to fix CRAN check

* frollmax fast adaptive non NA, dev

* froll docs, adaptive left

* no frollmax fast adaptive

* frollmax adaptive exact NAs handling

* PR summary in news

* copy-edit changes from reviews

Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* comment requested by Michael

* update NEWS file

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Apply suggestions from code review

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* add comment requested by Michael

* add comment about int iterator for loop over k-1 obs

* extra comments

* Revert "extra comments"

This reverts commit 03af0e3.

* add comments to frollmax and frollsum

* typo fix

---------

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>

* Friendlier error in assignment with trailing comma (#5467)

* friendlier error in assignment with trailing comma

e.g. `DT[, `:=`(a = 1, b = 2,)`.

WIP. Need to add tests and such, but editing from browser before I forget.

* Another pass

* include unnamed indices on RHS too

* tests

* NEWS

* test numbering

* explicit example in NEWS

* Link to ?read.delim in ?fread to give a closer analogue of expected behavior (#5635)

* fread is similar to read.delim (#5634)

* Use ?read.csv / ?read.delim

---------

Co-authored-by: Michael Chirico <chiricom@google.com>
Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>

* Run GHA jobs on 1-15-99 dev branch (#5909)

* overhauled linter

* revert code changes

* Initial commit of {lintr} approach

* first pass at personalization

* first custom linter

* delint vignettes

* delint tests

* delint R sources

* rm empty

* re-merge

* Move config to .ci directory

* Use endsWithAny

* Make declarations static for covr (#5910)

* restore lint on branch

* extension needed after all?

* set option in R

* debug printing

* Exact file name in option

* really hacky approach

* skip more linters

* One more round of deactivation

* FIx whitespace issues (again??)

* botched merge

* obsolete branch ref

* restore simple CI script thanks to upstream fix

* more delint

* just disable unused_import_linter() everywhere for now

* rm whitespace from atime tests

* comment about comment

---------

Co-authored-by: Ofek <ofekshilon@gmail.com>
Co-authored-by: Ani <bloodraven166@gmail.com>
Co-authored-by: David Budzynski <56514985+davidbudzynski@users.noreply.github.com>
Co-authored-by: Scott Ritchie <sritchie73@gmail.com>
Co-authored-by: Benjamin Schwendinger <benjamin.schwendinger@tuwien.ac.at>
Co-authored-by: Jan Gorecki <J.Gorecki@wit.edu.pl>
Co-authored-by: Benjamin Schwendinger <52290390+ben-schwen@users.noreply.github.com>
Co-authored-by: Manuel López-Ibáñez <2620021+MLopez-Ibanez@users.noreply.github.com>
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3 participants