Queue change - PBS (#719) #432

	name: github pages

	on:
	push:
	branches:
	- main
	- docs

	jobs:
	deploy:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}

	steps:
	- uses: actions/checkout@v2

	- name: Setup Mambaforge Python 3.7
	uses: conda-incubator/setup-miniconda@v2
	with:
	environment-file: environment.yml
	miniforge-variant: Mambaforge
	miniforge-version: latest
	activate-environment: arc_env
	python-version: 3.7
	use-mamba: true

	- name: Update environment
	run: \|
	mamba env update -n arc_env -f environment.yml
	conda list

	- name: Install LaTeX
	run: \|
	sudo apt update -y && sudo apt upgrade -y && sudo apt autoremove -y
	sudo apt install texlive-latex-base -y
	sudo apt-get install texlive-latex-extra -y
	sudo apt-get install -y dvipng


	- name: Install codecov
	run: mamba install -y -c conda-forge codecov

	- name: Install dependencies
	run: \|
	export PYTHONPATH=$PYTHONPATH:$(pwd)
	conda activate arc_env
	cd ..
	git clone https://github.com/ReactionMechanismGenerator/RMG-database
	git clone https://github.com/ReactionMechanismGenerator/RMG-Py
	cd RMG-Py
	export PYTHONPATH=$PYTHONPATH:$(pwd)
	make
	cd ../ARC/
	conda deactivate

	- name: Compile docs
	run: \|
	export PYTHONPATH=$PYTHONPATH:$(pwd)
	conda activate arc_env
	cd ../RMG-Py
	export PYTHONPATH=$PYTHONPATH:$(pwd)
	cd ../ARC/docs/
	make html

	- name: Deploy
	uses: peaceiris/actions-gh-pages@v3.7.3
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: ./docs/build/html/

	# https://github.com/marketplace/actions/github-pages-action

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