Fixed
- CalculateCovariates didn't work if any bias types were left out
Changed
- Major speed improvements (80% reduction) to covariate calculation when pcr is one of the bias types
- Brought covariate calculation code more in line with idiomatic python, making it easier to maintiain
- Minor speed improvements to peak calling
- Brought peak calling code more in line with idiomatic python, making it easier to maintain