Allowing users to alternatively provide image path list instead of pa…

…th to image containing folders.

.gitignore

@@ -119,4 +119,7 @@ dmypy.json
 .nox/
 
 # pytest cache dirs
-.pytest_cache/
+.pytest_cache/
+
+# csv files with features
+*.csv

README.md

@@ -33,7 +33,6 @@ Requirements:
 - numpy
 - opencv_contrib_python_headless
 - scipy
-- tqdm
 
 ## Usage
 
@@ -55,11 +54,23 @@ If you would like to import frd as a module, you can use the following code snip
 from frd_score import frd
 
 paths=['path/to/dataset_A', 'path/to/dataset_B']
-paths_masks=[path_mask_A, path_mask_B] # optionally, we can add masks.
+
+# optionally, use masks.
+paths_masks=[path_mask_A, path_mask_B] 
 
 frd_value = frd.compute_frd(paths, paths_masks=paths_masks) 
 ```
 
+Instead of providing the path to a folder, you may also directly provide a list to image paths (and/or masks).
+```
+img_paths_A = ['path/to/image1', 'path/to/image2']
+img_paths_B = ['path/to/image3', 'path/to/image4']
+
+paths=[img_paths_A, img_paths_B]
+
+frd_value = frd.compute_frd(paths) 
+```
+
 ## Additional arguments
 
 `--paths_masks` or `-M`: The two paths to the masks of the two datasets. The masks should have the same dimensions as the images. The masks should be binary images, where the region of interest is white (pixel value 255) and the background is black (pixel value 0). Masks are used to localize radiomics features.

requirements.in

@@ -5,7 +5,7 @@ Pillow~=10.3.0
 scipy~=1.10.0
 SimpleITK~=2.3.1
 pyradiomics==3.0.1a3
-tqdm~=4.64.1
+#tqdm~=4.64.1
 
 # Required for testing
 setuptools~=65.6.3

requirements.txt

@@ -71,7 +71,7 @@ tomli==2.0.1
     # via
     #   nox
     #   pytest
-tqdm==4.64.1
+#tqdm==4.64.1
     # via -r requirements.in
 virtualenv==20.26.0
     # via nox

setup.py

@@ -57,7 +57,7 @@ def get_version(rel_path):
             "scipy>=1.10.0",
             "opencv_contrib_python_headless>=4.8.1.78",
             "SimpleITK>=2.3.1",
-            "tqdm>=4.64.1",
+            #"tqdm>=4.64.1",
         ],
         extras_require={
             "dev": ["flake8", "flake8-bugbear", "flake8-isort", "black==24.3.0", "isort", "nox", "pytest>=8.1.1", "nibabel>=3.2.1", ]