Custom scripts used in:
Robert Horvath, Nikolaos Minadakis, Yann Bourgeois, Anne C. Roulin. (2023) The evolution of transposable elements in Brachypodium distachyon is governed by purifying selection, while neutral and adaptive processes play a minor role eLife 12:RP93284
Scripts to get the TE calls are in TE_calling
Scripts used to filter and format TE calls are in Data_processing
Scripts to run GEVA are in Run_GEVA
Scripts to merge vcf files are in vcf_merging
Scripts used to perform the forward simulations are in Simulations
Scripts used to carry out the different analyses presented in the manuscript are in Data_analyses