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Assemblies

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Sam White edited this page Aug 23, 2018 · 8 revisions
sequence_ID sequencer(s) assembly_url(fasta) assembler(s) reference quast_analysis initials date notebook_url
sn_raw_01 10x Genomics raw SuperNova NA SBR 201870306 https://sr320.github.io/Supernova-output/
sn_mb_01 10x Genomics megabubbles SuperNova NA SBR 201870306 https://sr320.github.io/Supernova-output/
sn_mb-10k_01 10x Genomics megabubbles-10k SuperNova NA SBR 201870306 https://sr320.github.io/Supernova-output/
sn_ph_01 10x Genomics pseudohap SuperNova NA SBR 201870306 https://sr320.github.io/Supernova-output/
sn_ph-10k_01 10x Genomics pseudohap-10k SuperNova NA SBR 201870306 https://sr320.github.io/Supernova-output/
sn_ph_02 10x Genomics pseudohap2 (1) SuperNova NA SBR 201870306 https://sr320.github.io/Supernova-output/
sn_ph_03 10x Genomics pseudohap2 (2) SuperNova NA SBR 201870306 https://sr320.github.io/Supernova-output/
sn_ph_02-10k_01 10x Genomics pseudohap2-10k (1) SuperNova NA SBR 201870306 https://sr320.github.io/Supernova-output/
sn_ph_02-10k_02 10x Genomics pseudohap2-10k (2) SuperNova NA SBR 201870306 https://sr320.github.io/Supernova-output/
sparse_01 NovaSeq Contigs.txt SparseAssembler NA results_2018_03_22_08_12_12/report.html SJW 20180312 http://onsnetwork.org/kubu4/2018/03/22/assembly-geoduck-novaseq-using-sparseassembler-tldr-it-worked/
sparse_02 NovaSeq Contigs.txt SparseAssembler NA results_2018_03_27_08_25_52/report.html SJW 20180322 http://onsnetwork.org/kubu4/2018/03/27/assembly-geoduck-novaseq-using-sparseassembler-kmer-101/
sparse_03 BGI, NMP, NovaSeq Contigs.txt SparseAssembler NA results_2018_04_15_13_45_03/report.html SJW 20180405 http://onsnetwork.org/kubu4/2018/04/05/genome-assembly-sparseassembler-geoduck-genomic-data-kmer101/
pga_01 Hi-C PGA_assembly.fasta Phase Genomics sn_ph_01 results_2018_04_30_11_16_04/report.html NA 20180403 http://onsnetwork.org/kubu4/2018/04/30/assembly-stats-geoduck-hi-c-assembly-comparison/
pga_02 Hi-C PGA_assembly.fasta Phase Genomics sn_ph_01 results_2018_04_30_11_16_04/report.html NA 20180419 http://onsnetwork.org/kubu4/2018/04/30/assembly-stats-geoduck-hi-c-assembly-comparison/
pga_03 Hi-C geoduck_manual_scaffolds.fasta Phase Genomics sn_ph_01 results_2018_08_23_07_38_28/report.html NA 20180810 http://onsnetwork.org/kubu4/2018/08/23/assembly-stats-geoduck-hi-c-final-assembly-comparison/
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