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Generate bedgraph files from Oly Rna-seq libraries #356

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sr320 opened this Issue Aug 27, 2018 · 2 comments

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commented Aug 27, 2018

To better annotate genome, please create bedgraphs of RNA-seq libraries found
https://github.com/RobertsLab/project-olympia.oyster-genomic/wiki/RNA-Seq-February-2018

likely trinity or bowtie to create bam --> bedtools/genomcov

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commented Sep 26, 2018

@kubu4 kubu4 closed this Sep 26, 2018

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commented Sep 27, 2018

Here's a different version, using Olurida_v080 genome assembly (data may not be fully transferred from Mox as of this posting - should finish around 01:30 tomorrow):

http://owl.fish.washington.edu/Athaliana/20180926_oly_RNAseq_genome_hisat2_bedgraph/20180926_oly_RNAseq.bedgraph

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