Skip to content

Latest commit

 

History

History
29 lines (24 loc) · 1.37 KB

TODO.md

File metadata and controls

29 lines (24 loc) · 1.37 KB

TODOs

  • Add DreamDIA scoring model
  • Generate concensus chrom traces per transition
  • Generate an exectuable

In Progress

Future TODOs?

  • raw .d data loading using alphatims api
  • Add a bruker .d loader using opentims

Completed

  • Fix interactivity reseting when certain options are selecting, protein and peptide selection boxes get reset
  • Add unit tests
  • Small dataset for testing
  • Add colors for different peak boundaries
  • Implement plotting PyProphet boundaries and scores
  • Add grid plot layout if multiple files are loaded
  • scale intensities of individual traces for chromatograms
  • Add peak picking using pyopenms
  • Major refactoring of code base. For main refactoring branch, see patch/masterRefactor
  • raw mzML data loading
  • DIA-NN results inspection on the raw data
  • Make available on PyPi closer to time of publication
  • Docker / or just ssh port
  • Add gauss smoothing to visualization display. See plotter.py#L169 and plotting_ui.py#L52
  • Add public base conformer model - added code, need to upload model