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Röst Lab

Röst lab at U of T -- join us at https://gitter.im/Roestlab/Lobby

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  1. massdash massdash Public

    MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization

    HTML 18 3

  2. massformer massformer Public

    Tandem Mass Spectrum Prediction with Graph Transformers

    Python 70 25

  3. PythonProteomics PythonProteomics Public

    A collection of available Python tools for Proteomics analysis

    46 11

  4. DIAlignR DIAlignR Public

    This is a R package for alignment of DIA mass-spec data

    R 11 6

  5. dia-pasef dia-pasef Public

    Scripts for DIA-Pasef

    Python 5 12

  6. OpenMS OpenMS Public

    Forked from OpenMS/OpenMS

    The codebase of the OpenMS project

    C++ 1 2

Repositories

Showing 10 of 22 repositories
  • diffusion-deconvolution-dia-msms-data Public

    🚀 Winner of the Donnelly Centre Innovation and Commercialization award: Apply diffusion models to deconvolute highly multiplexed DIA-MS/MS data by conditioning on MS1 signals to generate cleaner MS2 data for downstream analysis.

    Roestlab/diffusion-deconvolution-dia-msms-data’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 3 0 0 Updated Nov 8, 2024
  • massdash Public

    MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization

    Roestlab/massdash’s past year of commit activity
    HTML 18 BSD-3-Clause 3 17 2 Updated Nov 7, 2024
  • pyprophet Public Forked from PyProphet/pyprophet

    PyProphet: Semi-supervised learning and scoring of OpenSWATH results.

    Roestlab/pyprophet’s past year of commit activity
    Python 0 BSD-3-Clause 21 1 0 Updated Nov 1, 2024
  • OpenMS Public Forked from OpenMS/OpenMS

    The codebase of the OpenMS project

    Roestlab/OpenMS’s past year of commit activity
    C++ 1 325 0 3 Updated Oct 9, 2024
  • massformer Public

    Tandem Mass Spectrum Prediction with Graph Transformers

    Roestlab/massformer’s past year of commit activity
    Python 70 BSD-2-Clause 25 1 0 Updated Aug 26, 2024
  • PaPrInfer Public

    These are all the code that is associated with the project IDPicker vs EPIFANY

    Roestlab/PaPrInfer’s past year of commit activity
    Python 0 1 0 0 Updated Jul 6, 2024
  • easypqp Public Forked from grosenberger/easypqp

    EasyPQP: Simple library generation for OpenSWATH

    Roestlab/easypqp’s past year of commit activity
    Python 0 BSD-3-Clause 13 2 0 Updated May 26, 2023
  • dia-pasef Public

    Scripts for DIA-Pasef

    Roestlab/dia-pasef’s past year of commit activity
    Python 5 12 1 3 Updated Mar 29, 2023
  • OpenSWATHIDPIcker Public
    Roestlab/OpenSWATHIDPIcker’s past year of commit activity
    Python 0 0 0 0 Updated Oct 24, 2022
  • Aparna_Srinivasan_MS_Thesis_2022 Public

    Aparna's MSc thesis related scripts

    Roestlab/Aparna_Srinivasan_MS_Thesis_2022’s past year of commit activity
    Python 0 0 0 0 Updated Sep 29, 2022
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