Data and code to reproduce model by Roychowdhury and Roth describing biofilm response to antibiotics in a flow cell environment
Files:
| MATLAB File | Explanation |
|---|---|
| Read_New1.m, Muskerror_New1.m | Error and optimization functions |
| TOBContinuousTreatment.m, Musken_5Comp.m | Continuous treatment for 5, 20, and 50 micrograms/mL of TOB |
| TOB4HRCombined.m, Musken_wKs_after4.m | 4 hour treatment for for 5, 20, and 50 micrograms/mL of TOB |
| CSTContFINAL.m, CST_OneComp.m | Continuous treatment for 2.5, 10, and 25 micrograms/mL of CST |
| CST4hr_FINAL.m | 4 hour treatment for 2.5, 10, and 25 micrograms/mL of CST |
| CombinedTOB5CST10.m, CombineCST_TOB_New.m | Combination treatement of TOB and CST (for multple concentrations) |
| WithoutPara.m, Musken_woA.m, Musken_woB.m, Musken_woKt.m, Musken_woN.m, Musken_woU.m | How the model would be affected without each parameter |
| ParaSensitivity.m | Parametric sensitivity of the used parameters |
The Excel files contain the data points digitized at different drug concentrations from Musken that were used to validate the model.