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config.yml
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config.yml
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# This is the Docker default root config file, which configures aratiny, the demo Knetminer instance
# used when no other option is given to Docker.
#
# Your dataset will need its own version of this file.
#
"@includes":
- defaults-cfg.yml
# oxl: data/knowledge-network.oxl this is the default
# Details about the datset and supported species
#
"dataset @merge":
id: poaceae-test
title: Beta Poaceae KnetMiner
version: 55
# Have a look here about YAML multi-line strings: http://yaml-multiline.info
description: >-
Beta version of the KnetMiner gene discovery platform for Arabidopsis, wheat and rice.
The instance is auto-updated upon Knetminer rebuild (from GitHub Actions).
keywords: Knetminer Beta, Knetminer CI, wheat, rice, Arabidopsis
# organization: is in the defaults
# sampleQueries: config/sample-queries.xml # this is a default
# backgroundImage: config/background.jpg # this is the default
# ======> WARNING!
# SemanticMotif.txt won't work if you include Arabidopsis (endless paths met).
# For that to work, you need to use SemanticMotifs-no-ara.txt
# I've also experienced problems with adding rice to the first two.
#
species:
- taxId: 3702
scientificName: Arabidopsis thaliana
commonName: Arabidopsis
- taxId: 4565
scientificName: Triticum aestivum
commonName: Wheat
- taxId: 39947
scientificName: Oryza sativa Japonica
commonName: Rice
#seedGenesFile: config/seed-genes-poaceae.tsv
# WARNING: READ the notes in defaults-cfg.yml!
#
googleAnalyticsAPI:
measurementId: G-31YFKXKSYH # Converted from old UA-237399750-1
apiSecret: c9TGJqIBSVuKB1CoRcZ90Q
# We're using the same as the API, but we need to override defaults
googleAnalyticsClient:
measurementId: G-31YFKXKSYH
apiSecret: c9TGJqIBSVuKB1CoRcZ90Q
# These are custom options, which aren't explicitly defined by the Knetminer configuration.
# See KnetminerConfiguration.getCustomOptions() at https://tinyurl.com/2en342tb for details.
#
# WARNING: DO NOT ABUSE this feature! As explained in the link above, this is an hack to help with provisional
# or uncommon configuration parameters. Using this section SHOULD BE AN EXCEPTION to defining configuration
# variables explicitly (out of this section), so that they can be validated.
#
customOptions:
ui:
# Enable it to show a "give us feedback" banner on the UI. This is a feature used by us at knetminer.com
# Likely, you don't want it enabled.
betaFeedbackBannerEnabled: true