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@Royal-Botanic-Gardens-Victoria

Royal Botanic Gardens Victoria

Github Repos for the Royal Botanic Gardens Victoria Bioinformatics department.

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  1. VicMicrobiome VicMicrobiome Public

    Soil meta-barcoding across the state of Victoria, Australia

    HTML 2 1

  2. PAFTOL-taxonomy-classifier PAFTOL-taxonomy-classifier Public

    #Scripts to create Kraken2 database of PAFTOL V2.0 Angio353 genes. An excellent database for taxonomic identification of plants. #https://treeoflife.kew.org/ #https://github.com/DerrickWood/kraken2…

    Python 1

  3. DNA_entropy_scripts DNA_entropy_scripts Public

    Python scripts for calculating and filtering DNA entropy

    Python

  4. turbo_scripts turbo_scripts Public

    Parallelises common commands

    Python

  5. species2taxid.py species2taxid.py Public

    Fetches the NCBI TaxID and full taxonomy from list of species names.

    Python

  6. gap-download gap-download Public

    Downloads files from the GAP data portal https://data.bioplatforms.com/organization/about/bpa-plants

    Python

Repositories

Showing 10 of 12 repositories
  • NanoFungiBarcode Public
    Royal-Botanic-Gardens-Victoria/NanoFungiBarcode’s past year of commit activity
    0 0 0 0 Updated Jul 2, 2024
  • DNA_entropy_scripts Public

    Python scripts for calculating and filtering DNA entropy

    Royal-Botanic-Gardens-Victoria/DNA_entropy_scripts’s past year of commit activity
    Python 0 0 0 0 Updated May 27, 2024
  • AAToL Public

    Scripts and pipelines for Australian Angiosperm Tree of Life Paper

    Royal-Botanic-Gardens-Victoria/AAToL’s past year of commit activity
    0 0 0 0 Updated Jan 10, 2024
  • VicMicrobiome Public

    Soil meta-barcoding across the state of Victoria, Australia

    Royal-Botanic-Gardens-Victoria/VicMicrobiome’s past year of commit activity
    HTML 2 GPL-3.0 1 2 0 Updated Jun 29, 2023
  • GAP_hybpiper_helpers Public

    Helper / wrapper scripts for running Hybpiper2 on NCI Gadi.

    Royal-Botanic-Gardens-Victoria/GAP_hybpiper_helpers’s past year of commit activity
    Python 0 1 0 0 Updated Feb 26, 2023
  • gap-download Public

    Downloads files from the GAP data portal https://data.bioplatforms.com/organization/about/bpa-plants

    Royal-Botanic-Gardens-Victoria/gap-download’s past year of commit activity
    Python 0 0 0 0 Updated Feb 2, 2023
  • HybPiper-RBGV Public Forked from chrisjackson-pellicle/hybpiper-nf

    Nextflow/Singularity pipeline for running modified scripts from HybPiper (https://github.com/mossmatters/HybPiper)

    Royal-Botanic-Gardens-Victoria/HybPiper-RBGV’s past year of commit activity
    Nextflow 0 GPL-3.0 2 0 0 Updated Sep 6, 2022
  • genomes_update Public

    Search NCBI for latest genome and sequence data for a specified taxon

    Royal-Botanic-Gardens-Victoria/genomes_update’s past year of commit activity
    Python 0 1 0 0 Updated Jun 2, 2022
  • taxonkit Public Forked from shenwei356/taxonkit

    A Practical and Efficient NCBI Taxonomy Toolkit

    Royal-Botanic-Gardens-Victoria/taxonkit’s past year of commit activity
    Go 0 MIT 29 0 0 Updated May 31, 2022
  • species2taxid.py Public

    Fetches the NCBI TaxID and full taxonomy from list of species names.

    Royal-Botanic-Gardens-Victoria/species2taxid.py’s past year of commit activity
    Python 0 0 0 0 Updated May 20, 2022
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