Shiny application for differential expresion analysis

This repository contains a web-based tool that allows the user to load his own experimental Affymetrix microarray data or RNA-Seq data (alternatively data can be downloaded from ArrayExpress database), and perform the usual pipeline of differential gene expression analysis:

1. Pre-analysis visual exploration of the data
2. Identification of DEG
3. Annotation and enrichment analysis

The tool is developed using shiny, a web application framework for R.

To run the tool:

1. Download the repository and extract it.

2. Run ui.R or server.R

Requirements:

R version 3.5.3.

Biocmanager() package installed