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PERF: faster access to the dtype for masked numeric arrays (pandas-de…
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topper-123 authored and Yi Wei committed May 19, 2023
1 parent 564c0fa commit 96b6a6f
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Showing 7 changed files with 35 additions and 34 deletions.
1 change: 1 addition & 0 deletions doc/source/whatsnew/v2.1.0.rst
Original file line number Diff line number Diff line change
Expand Up @@ -280,6 +280,7 @@ Performance improvements
- Performance improvement when parsing strings to ``boolean[pyarrow]`` dtype (:issue:`51730`)
- Performance improvement when searching an :class:`Index` sliced from other indexes (:issue:`51738`)
- Performance improvement in :func:`concat` (:issue:`52291`, :issue:`52290`)
- Performance improvement accessing :attr:`arrays.IntegerArrays.dtype` & :attr:`arrays.FloatingArray.dtype` (:issue:`52998`)
- Performance improvement in :class:`Series` reductions (:issue:`52341`)
- Performance improvement in :func:`concat` when ``axis=1`` and objects have different indexes (:issue:`52541`)
- Performance improvement in :meth:`Series.corr` and :meth:`Series.cov` for extension dtypes (:issue:`52502`)
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10 changes: 5 additions & 5 deletions pandas/core/arrays/floating.py
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Expand Up @@ -36,8 +36,8 @@ def construct_array_type(cls) -> type[FloatingArray]:
return FloatingArray

@classmethod
def _str_to_dtype_mapping(cls):
return FLOAT_STR_TO_DTYPE
def _get_dtype_mapping(cls) -> dict[np.dtype, FloatingDtype]:
return NUMPY_FLOAT_TO_DTYPE

@classmethod
def _safe_cast(cls, values: np.ndarray, dtype: np.dtype, copy: bool) -> np.ndarray:
Expand Down Expand Up @@ -153,7 +153,7 @@ class Float64Dtype(FloatingDtype):
__doc__ = _dtype_docstring.format(dtype="float64")


FLOAT_STR_TO_DTYPE = {
"float32": Float32Dtype(),
"float64": Float64Dtype(),
NUMPY_FLOAT_TO_DTYPE: dict[np.dtype, FloatingDtype] = {
np.dtype(np.float32): Float32Dtype(),
np.dtype(np.float64): Float64Dtype(),
}
22 changes: 11 additions & 11 deletions pandas/core/arrays/integer.py
Original file line number Diff line number Diff line change
Expand Up @@ -36,8 +36,8 @@ def construct_array_type(cls) -> type[IntegerArray]:
return IntegerArray

@classmethod
def _str_to_dtype_mapping(cls):
return INT_STR_TO_DTYPE
def _get_dtype_mapping(cls) -> dict[np.dtype, IntegerDtype]:
return NUMPY_INT_TO_DTYPE

@classmethod
def _safe_cast(cls, values: np.ndarray, dtype: np.dtype, copy: bool) -> np.ndarray:
Expand Down Expand Up @@ -208,13 +208,13 @@ class UInt64Dtype(IntegerDtype):
__doc__ = _dtype_docstring.format(dtype="uint64")


INT_STR_TO_DTYPE: dict[str, IntegerDtype] = {
"int8": Int8Dtype(),
"int16": Int16Dtype(),
"int32": Int32Dtype(),
"int64": Int64Dtype(),
"uint8": UInt8Dtype(),
"uint16": UInt16Dtype(),
"uint32": UInt32Dtype(),
"uint64": UInt64Dtype(),
NUMPY_INT_TO_DTYPE: dict[np.dtype, IntegerDtype] = {
np.dtype(np.int8): Int8Dtype(),
np.dtype(np.int16): Int16Dtype(),
np.dtype(np.int32): Int32Dtype(),
np.dtype(np.int64): Int64Dtype(),
np.dtype(np.uint8): UInt8Dtype(),
np.dtype(np.uint16): UInt16Dtype(),
np.dtype(np.uint32): UInt32Dtype(),
np.dtype(np.uint64): UInt64Dtype(),
}
10 changes: 5 additions & 5 deletions pandas/core/arrays/numeric.py
Original file line number Diff line number Diff line change
Expand Up @@ -100,7 +100,7 @@ def __from_arrow__(
return array_class(data.copy(), ~mask, copy=False)

@classmethod
def _str_to_dtype_mapping(cls) -> Mapping[str, NumericDtype]:
def _get_dtype_mapping(cls) -> Mapping[np.dtype, NumericDtype]:
raise AbstractMethodError(cls)

@classmethod
Expand All @@ -114,9 +114,9 @@ def _standardize_dtype(cls, dtype: NumericDtype | str | np.dtype) -> NumericDtyp
dtype = dtype.lower()

if not isinstance(dtype, NumericDtype):
mapping = cls._str_to_dtype_mapping()
mapping = cls._get_dtype_mapping()
try:
dtype = mapping[str(np.dtype(dtype))]
dtype = mapping[np.dtype(dtype)]
except KeyError as err:
raise ValueError(f"invalid dtype specified {dtype}") from err
return dtype
Expand Down Expand Up @@ -250,8 +250,8 @@ def __init__(

@cache_readonly
def dtype(self) -> NumericDtype:
mapping = self._dtype_cls._str_to_dtype_mapping()
return mapping[str(self._data.dtype)]
mapping = self._dtype_cls._get_dtype_mapping()
return mapping[self._data.dtype]

@classmethod
def _coerce_to_array(
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12 changes: 6 additions & 6 deletions pandas/core/dtypes/cast.py
Original file line number Diff line number Diff line change
Expand Up @@ -1038,10 +1038,10 @@ def convert_dtypes(
target_int_dtype = pandas_dtype_func("Int64")

if input_array.dtype.kind in "iu":
from pandas.core.arrays.integer import INT_STR_TO_DTYPE
from pandas.core.arrays.integer import NUMPY_INT_TO_DTYPE

inferred_dtype = INT_STR_TO_DTYPE.get(
input_array.dtype.name, target_int_dtype
inferred_dtype = NUMPY_INT_TO_DTYPE.get(
input_array.dtype, target_int_dtype
)
elif input_array.dtype.kind in "fcb":
# TODO: de-dup with maybe_cast_to_integer_array?
Expand All @@ -1060,10 +1060,10 @@ def convert_dtypes(
if convert_floating:
if input_array.dtype.kind in "fcb":
# i.e. numeric but not integer
from pandas.core.arrays.floating import FLOAT_STR_TO_DTYPE
from pandas.core.arrays.floating import NUMPY_FLOAT_TO_DTYPE

inferred_float_dtype: DtypeObj = FLOAT_STR_TO_DTYPE.get(
input_array.dtype.name, pandas_dtype_func("Float64")
inferred_float_dtype: DtypeObj = NUMPY_FLOAT_TO_DTYPE.get(
input_array.dtype, pandas_dtype_func("Float64")
)
# if we could also convert to integer, check if all floats
# are actually integers
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8 changes: 4 additions & 4 deletions pandas/core/dtypes/dtypes.py
Original file line number Diff line number Diff line change
Expand Up @@ -1471,13 +1471,13 @@ def from_numpy_dtype(cls, dtype: np.dtype) -> BaseMaskedDtype:

return BooleanDtype()
elif dtype.kind in "iu":
from pandas.core.arrays.integer import INT_STR_TO_DTYPE
from pandas.core.arrays.integer import NUMPY_INT_TO_DTYPE

return INT_STR_TO_DTYPE[dtype.name]
return NUMPY_INT_TO_DTYPE[dtype]
elif dtype.kind == "f":
from pandas.core.arrays.floating import FLOAT_STR_TO_DTYPE
from pandas.core.arrays.floating import NUMPY_FLOAT_TO_DTYPE

return FLOAT_STR_TO_DTYPE[dtype.name]
return NUMPY_FLOAT_TO_DTYPE[dtype]
else:
raise NotImplementedError(dtype)

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6 changes: 3 additions & 3 deletions pandas/tests/extension/base/dim2.py
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@
)

import pandas as pd
from pandas.core.arrays.integer import INT_STR_TO_DTYPE
from pandas.core.arrays.integer import NUMPY_INT_TO_DTYPE
from pandas.tests.extension.base.base import BaseExtensionTests


Expand Down Expand Up @@ -215,10 +215,10 @@ def get_reduction_result_dtype(dtype):
if dtype.itemsize == 8:
return dtype
elif dtype.kind in "ib":
return INT_STR_TO_DTYPE[np.dtype(int).name]
return NUMPY_INT_TO_DTYPE[np.dtype(int)]
else:
# i.e. dtype.kind == "u"
return INT_STR_TO_DTYPE[np.dtype(np.uint).name]
return NUMPY_INT_TO_DTYPE[np.dtype(np.uint)]

if method in ["median", "sum", "prod"]:
# std and var are not dtype-preserving
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