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setup.py
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setup.py
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# Copyright (c) 2017-2019 Uber Technologies, Inc.
# SPDX-License-Identifier: Apache-2.0
import os
import subprocess
import sys
from setuptools import find_packages, setup
PROJECT_PATH = os.path.dirname(os.path.abspath(__file__))
VERSION = """
# This file is auto-generated with the version information during setup.py installation.
__version__ = '{}'
"""
# Find pyro version.
for line in open(os.path.join(PROJECT_PATH, "pyro", "__init__.py")):
if line.startswith("version_prefix = "):
version = line.strip().split()[2][1:-1]
# Append current commit sha to version
commit_sha = ""
try:
current_tag = (
subprocess.check_output(["git", "tag", "--points-at", "HEAD"], cwd=PROJECT_PATH)
.decode("ascii")
.strip()
)
# only add sha if HEAD does not point to the release tag
if not current_tag == version:
commit_sha = (
subprocess.check_output(
["git", "rev-parse", "--short", "HEAD"], cwd=PROJECT_PATH
)
.decode("ascii")
.strip()
)
# catch all exception to be safe
except Exception:
pass # probably not a git repo
# Write version to _version.py
if commit_sha:
version += "+{}".format(commit_sha)
with open(os.path.join(PROJECT_PATH, "pyro", "_version.py"), "w") as f:
f.write(VERSION.format(version))
# READ README.md for long description on PyPi.
# This requires uploading via twine, e.g.:
# $ python setup.py sdist bdist_wheel
# $ twine upload --repository-url https://test.pypi.org/legacy/ dist/* # test version
# $ twine upload dist/*
try:
long_description = open("README.md", encoding="utf-8").read()
except Exception as e:
sys.stderr.write("Failed to read README.md: {}\n".format(e))
sys.stderr.flush()
long_description = ""
# Remove badges since they will always be obsolete.
# This assumes the first 12 lines contain badge info.
long_description = "\n".join([str(line) for line in long_description.split("\n")[12:]])
# examples/tutorials
EXTRAS_REQUIRE = [
"jupyter>=1.0.0",
"graphviz>=0.8",
"matplotlib>=1.3",
"torchvision>=0.12.0",
"visdom>=0.1.4,<0.2.2", # FIXME visdom.utils is unavailable >=0.2.2
"pandas",
"pillow==8.2.0", # https://github.com/pytorch/pytorch/issues/61125
"scikit-learn",
"seaborn>=0.11.0",
"wget",
"lap", # Requires setuptools<60
# 'biopython>=1.54',
# 'scanpy>=1.4', # Requires HDF5
# 'scvi>=0.6', # Requires loopy and other fragile packages
]
setup(
name="pyro-ppl",
version=version,
description="A Python library for probabilistic modeling and inference",
long_description=long_description,
long_description_content_type="text/markdown",
packages=find_packages(include=["pyro", "pyro.*"]),
package_data={"pyro.distributions": ["*.cpp"]},
author="Uber AI Labs",
url="http://pyro.ai",
project_urls={
"Documentation": "https://docs.pyro.ai",
"Source": "https://github.com/pyro-ppl/pyro",
},
install_requires=[
# if you add any additional libraries, please also
# add them to `docs/requirements.txt`
# numpy is necessary for some functionality of PyTorch
"numpy>=1.7",
"opt_einsum>=2.3.2",
"pyro-api>=0.1.1",
"torch>=1.11.0",
"tqdm>=4.36",
],
extras_require={
"extras": EXTRAS_REQUIRE,
"test": EXTRAS_REQUIRE
+ [
"black>=21.4b0",
"flake8",
"nbval",
"pytest>=5.0",
"pytest-cov",
"scipy>=1.1",
],
"profile": ["prettytable", "pytest-benchmark", "snakeviz"],
"dev": EXTRAS_REQUIRE
+ [
"black>=21.4b0",
"flake8",
"isort>=5.0",
"mypy>=0.812",
"nbformat",
"nbsphinx>=0.3.2",
"nbstripout",
"nbval",
"ninja",
"pypandoc",
"pytest>=5.0",
"pytest-xdist",
"scipy>=1.1",
"sphinx",
"sphinx_rtd_theme",
"yapf",
],
"horovod": ["horovod[pytorch]>=0.19"],
"funsor": [
# This must be a released version when Pyro is released.
# "funsor[torch] @ git+git://github.com/pyro-ppl/funsor.git@7bb52d0eae3046d08a20d1b288544e1a21b4f461",
"funsor[torch]==0.4.4",
],
},
python_requires=">=3.7",
keywords="machine learning statistics probabilistic programming bayesian modeling pytorch",
license="Apache 2.0",
classifiers=[
"Intended Audience :: Developers",
"Intended Audience :: Education",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Operating System :: POSIX :: Linux",
"Operating System :: MacOS :: MacOS X",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
],
# yapf
)