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@SATVILab

SATVI, University of Cape Town

Research Centre at the University of Cape Town
README.md

The South African Tuberculosis Vaccine Initiative is a clinical research centre, located within the Health Sciences Faculty at the University of Cape Town. SATVI's mission is the development of new and effective vaccination strategies against TB and has a strong TB clinical immunology laboratory. We provide data and code via GitHub to reproduce our analyses, as well as packages implementing our own algorithms and small packages extending others.

We use a consistent naming system, with the following prefixes indicating the purpose of the repository:

  • DataTidy: processes data
  • Analysis: analyses data
  • Report: details and summarises analyses
  • Pipeline: project-specific functions
  • Utils: extend existing packages with utility functions
  • Minor: very small self-contained analyses

For a directory of publicly-available projects and packages, see here for projects and here for packages.

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  1. ReportGelaDURT ReportGelaDURT Public

    Gela (2022) analyses and figures

    R

  2. DataTidyGelaDURT DataTidyGelaDURT Public

    Gela (2022) datasets

    R

  3. UtilsCompassSV UtilsCompassSV Public

    Utility functions to plot and work with COMPASS output

    R

  4. UtilsDataRSV UtilsDataRSV Public

    Facilitate data pre-processing

    R 1

  5. UtilsGGSV UtilsGGSV Public

    Utility functions for ggplot2

    R

  6. UtilsCytoRSV UtilsCytoRSV Public

    R

Repositories

Showing 10 of 22 repositories
  • CompTemplate Public template Forked from MiguelRodo/CompTemplate
    SATVILab/CompTemplate’s past year of commit activity
    0 1 0 0 Updated Jun 26, 2024
  • SATVI_ComputationalCourse Public

    This repository contains all materials needed for the SATVI Computational Course. These resources are version-controlled, living documents that will be updated as needed as the course progresses.

    SATVILab/SATVI_ComputationalCourse’s past year of commit activity
    HTML 0 0 0 0 Updated Jun 18, 2024
  • projr Public

    Streamline R projects

    SATVILab/projr’s past year of commit activity
    R 1 1 144 0 Updated Jun 13, 2024
  • UtilsReportRSV Public
    SATVILab/UtilsReportRSV’s past year of commit activity
    R 0 0 3 0 Updated Jun 11, 2024
  • DataTidy19RodoVaccComp Public

    Processing raw data for Rodo (2019) PLOS Pathogens paper

    SATVILab/DataTidy19RodoVaccComp’s past year of commit activity
    R 0 CC-BY-4.0 0 0 0 Updated May 3, 2024
  • M72_CITEseqHIVE_scRNAseq_Pipeline Public
    SATVILab/M72_CITEseqHIVE_scRNAseq_Pipeline’s past year of commit activity
    TeX 0 0 0 0 Updated Apr 15, 2024
  • UtilsGGSV Public

    Utility functions for ggplot2

    SATVILab/UtilsGGSV’s past year of commit activity
    R 0 0 0 0 Updated Mar 7, 2024
  • Masters-Thesis- Public Forked from Kelly-A-W/Masters-Thesis-

    All code pertaining to my masters thesis which investigates the effects of two subunit vaccines H1:IC31 and H56:IC31 as well as prior M.tb sensitization on the immune responses of three cohorts of South African adolescents and adults.

    SATVILab/Masters-Thesis-’s past year of commit activity
    R 0 1 0 0 Updated Dec 13, 2023
  • Template23MusvosviGatingSetToWsp Public template
    SATVILab/Template23MusvosviGatingSetToWsp’s past year of commit activity
    R 0 0 0 0 Updated Dec 13, 2023
  • UtilsFaustSV Public
    SATVILab/UtilsFaustSV’s past year of commit activity
    R 0 0 2 0 Updated Oct 17, 2023
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