Whole slide tissue image analysis pipelines

Classification of lymphocyte patterns: https://github.com/SBU-BMI/quip_classification

Tumor segmentation:

Breast cancer cases: https://github.com/SBU-BMI/quip_cancer_segmentation

Prostate cancer cases: https://github.com/SBU-BMI/quip_prad_cancer_detection

Pancreatic cancer cases: https://github.com/SBU-BMI/quip_paad_cancer_detection

Nuclear Segmentation:

Nucleus segmentation pipeline: https://github.com/SBU-BMI/quip_cnn_segmentation

Computation of patch-level features from nucleus segmentations: https://github.com/SBU-BMI/pyradiomics_features